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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtctaacttaaattattctcttacaactaatggagtcaaatccttgtgcaaatggtttattttcgtttggtcttatttcttctgtgtgttgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTG

Basic information

species Arabidopsis thaliana
transcript AT4G02590.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164152454|gb|ES117038.1|ES117038
EST:     AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCT                         GTTTTCCACGGGCAGCCTATGCAAC
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAAC
EST: gi|116470271|gb|EG512863.1|EG512863
EST:     AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCT                         GTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
EST: gi|116470276|gb|EG512868.1|EG512868
EST:     AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCT                         GTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
EST: gi|116435549|gb|EG478141.1|EG478141
EST:     AAAGATTCTCAGATGATGTCGTTGATAATCGATGTTCTTCTATGAAACCT                         GTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG
genomic: AAAGATTCTCAGATGATGTTGTTGATAATCGATGTTCTTCTATGAAACCTgtaagttctg ... tgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcaaatggtttattttcgtttggtcttatttcttctgtgtgttgtctggaagGTTTTCCACGGGCAGCCTATGCAACAGCCACCTCCATCGGCCCCACATCAGCCTACTTCAATCCGTCCCAGGGTTCGAGCTAGGCGTGGTCAGGCTACTG
     aaatggtttatttt  TA-rich tract