1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catcaatagtgaaaagattctatattgatttagacgtgaagtcatgaaaattgactaacaagattctaacgtttggttctgttttgctctgttttattagATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCATCTTTGTCTAAGAGAT
species | Arabidopsis thaliana |
transcript | AT4G01480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTTCTCCACACTTTCCGCAAGATTGTTCTGTTCTTCAAACGATTCTAAG ATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAACEST: gi|116470397|gb|EG512989.1|EG512989
genomic: CTTTCTCCACACTTTCCGCAAGATTGTTCTGTTCTTCAAACGATTCTAAGgtacgacttt ... gttttattagATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAAC
EST: CTTTCTCCACACTTTCCGCAAGATTGTTCTGTTCTTCAAACGATTCTAAG ATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAAC
genomic: CTTTCTCCACACTTTCCGCAAGATTGTTCTGTTCTTCAAACGATTCTAAGgtacgacttt ... gttttattagATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAAC
gaaaattgactaacaagattctaacgtttggttctgttttgctctgttttattagATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCATCTTTGTCTAAGAGAT
ttctaac putative branch site (score: 1)
ttttgctctgtttt putative PPT
tgttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catcaatagtgaaaagattctatattgatttagacgtgaagtcatgaaaattgactaacaagattctaacgtttggttctgttttgctctgttttattagATGAATGGAGAAGAAGTGAAAACGAGTCAACCTCAGAAGAAGCTTCAGAACCCTACTCCACGTTTAAACGAGAGGATTCTCTCATCTTTGTCTAAGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - gaaaaga
- - - - - - - - - - - - - gatttag
- - - - - - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtttgg