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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggttacatagttatggaccgaccgacacactctgtttttgtatcttgatgatgagtttattctgttttgaaaaatgaagGAGGTGTCACCGTTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACGGAGACAGACAGTCCTCCTATCTCCCCTT

Basic information

species Arabidopsis thaliana
transcript AT3G63300.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G63300.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os12g41140.1 (Oryza sativa), 3'ss of exon 1
--------------gtacggttacatagttatggaccgaccgaca---cactctgtttttgtatcttgatgatgagtttatt--ctgttttgaaaaatga-agGAGGTGTCACCGTTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACGGAGACAGACAGTCCTCCTATCTCCCCTT---
              ||    ||     ||| ||    || |   |   |||| ||    |  |   |||  ||    |  ||   |||||     |     |||||||||| ||| | || || ||  | || ||||||||||||||||| |||||||||||||| ||  |  | ||      ||| || ||  |||| ||     
gttcaatgattattgtgaaattgtgctgttctgcttggaacagtagctcactttgcagatagacactgagaatttactcgtttcttgtttcatggagcagCAGGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGA------CAGCCCACCGGTCTCGCCGGACG

upper sequence: AT3G63300.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os12g41140.3 (Oryza sativa), 3'ss of exon 1
-----------gtacggttacatagttatggaccgaccgaca---cactctgtttttgtatcttgatgatgagtttatt--ctgttttgaaaaat-gaagGAGGTGTCACCGTTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACGGAGACAGACAGTCCTCCTATCTCCCCTT------
           ||    ||     ||| ||    || |   |   |||| ||    |  |   |||  ||    |  ||   |||||     |   | |||||||||| ||| | || || ||  | || ||||||||||||||||| |||||||||||||| ||  |  | ||      ||| || ||  |||| ||        
caatgattattgtgaaattgtgctgttctgcttggaacagtagctcactttgcagatagacactgagaatttactcgtttcttgtttcatggagcagcagGAGGTGTCGCCGCTGACCTCCGGCCGCCTCTCACACAGCAGCGGCCCTCTCAACGGCGGCGGCTCGCTCTCCGA------CAGCCCACCGGTCTCGCCGGACGTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacactctgtttttgtatcttgatgatgagtttattctgttttgaaaaatgaagGAGGTGTCACCGTTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACGGAGACAGACAGTCCTCCTATCTCCCCTT
                  tcttgat  putative branch site (score: 4)
                                        ttttgaaaaatgaa  TA-rich tract