1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataaccatgcatatgttttgtatgtgtttgcttgtgactctcttctgtggcaattttgctggttatgtttgaaattttaacggaatgaatttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAGAG
species | Arabidopsis thaliana |
transcript | AT3G61260.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGEST: gi|116446100|gb|EG488692.1|EG488692
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAG
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|125061438|gb|EL130077.1|EL130077
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTEST: gi|125299302|gb|EL313387.1|EL313387
genomic: GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGT
EST: CCAAAGCCCTTACTGTTGTTGAGAA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATEST: gi|124781998|gb|EH871941.1|EH871941
genomic: CCAAAGCCCTTACTGTTGTTGAG-Agtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGAT
EST: GACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|124826103|gb|EH910969.1|EH910969
genomic: GACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: CCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|124836872|gb|EH921311.1|EH921311
genomic: CCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTACTAGCATCGCTCGAEST: gi|125192610|gb|EL207564.1|EL207564
genomic: GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGT-CT-GCATCGCTCGA
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAAEST: gi|86080975|gb|DR376732.1|DR376732
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAA
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|116446101|gb|EG488693.1|EG488693
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|125257843|gb|EL271928.1|EL271928
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: CCTCCGGAGCAAATTTTCGTATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGEST: gi|125070065|gb|EL135616.1|EL135616
genomic: CCTCCGGAGCAAATTTTCG-ATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCG
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAAEST: gi|125042092|gb|EL114361.1|EL114361
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAA
EST: CCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|116446103|gb|EG488695.1|EG488695
genomic: CCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: ACCTCCGGGGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAEST: gi|124775990|gb|EH866117.1|EH866117
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCAEST: gi|124737429|gb|EH828831.1|EH828831
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCA
EST: CCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: CCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
tgtggcaattttgctggttatgtttgaaattttaacggaatgaatttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAGAG
ttttaac putative branch site (score: 2)
tttttttac putative PPT
ttatgtttgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaccatgcatatgttttgtatgtgtttgcttgtgactctcttctgtggcaattttgctggttatgtttgaaattttaacggaatgaatttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATAGAG
ataacca
- - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacggaa