1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgcattcgtggttcgatttctagggtttcttcaagttcctgatcggttgtttgagcttattcggtaatctttgtttcggttgcagGAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGCTCTAATGGCTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCG
species | Arabidopsis thaliana |
transcript | AT3G61050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAG GAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGEST: gi|164175046|gb|ES179804.1|ES179804
genomic: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAGgtttgcattc ... tcggttgcagGAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAG
EST: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAG GAAAA-TGGGTTTGATTTCTGGGATTCEST: gi|19874467|gb|AU235298.1|AU235298
genomic: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAGgtttgcattc ... tcggttgcagGAAAAATGGGTTTGATTTCTGGGATTC
EST: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAG GAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGEST: gi|125241185|gb|EL255270.1|EL255270
genomic: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAGgtttgcattc ... tcggttgcagGAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAG
EST: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAG GAAAAATGGGTTTGATTTCTGGGA
genomic: CTGTTGCCGACGCTTCTCGCCGATAACACCGGTTTTGTTGTGACGGAAAGgtttgcattc ... tcggttgcagGAAAAATGGGTTTGATTTCTGGGA
tcaagttcctgatcggttgtttgagcttattcggtaatctttgtttcggttgcagGAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGCTCTAATGGCTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCG
tcctgat putative branch site (score: 3)
tctttgtttc putative PPT
taatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcattcgtggttcgatttctagggtttcttcaagttcctgatcggttgtttgagcttattcggtaatctttgtttcggttgcagGAAAAATGGGTTTGATTTCTGGGATTCTGTTCGGGATTATCTTCGGCGTAGCTCTAATGGCTGGCTGGAGTCGTATGATGACTCACCGATCGTCCAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA