1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgctcacaacataccaataatctatgtgttatgaattgcatttgggttttcactaatgatttactcccaggggctctgtttctatgtgatgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACAAAGAGGACAATGTGACTTGTAGGTTTGACTCAGATGAAGACACCACCA
species | Arabidopsis thaliana |
transcript | AT3G59870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATG TGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGEST: gi|86039597|gb|DR335352.1|DR335352
genomic: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGgtaatttctg ... tgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTG
EST: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATG TGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACEST: gi|86039594|gb|DR335349.1|DR335349
genomic: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGgtaatttctg ... tgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAAC
EST: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATG TGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACEST: gi|86039596|gb|DR335351.1|DR335351
genomic: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGgtaatttctg ... tgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAAC
EST: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATG TGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAAC
genomic: TCTCTGTTAGACGACGCCGATCCAGATCCTCCTCTCCCTCTATTCCCATGgtaatttctg ... tgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAAC
ggttttcactaatgatttactcccaggggctctgtttctatgtgatgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACAAAGAGGACAATGTGACTTGTAGGTTTGACTCAGATGAAGACACCACCA
cactaat putative branch site (score: 2)
taatgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctcacaacataccaataatctatgtgttatgaattgcatttgggttttcactaatgatttactcccaggggctctgtttctatgtgatgctgtatagTGCTTTCCTGAACAAACGAGAGATCAAGACGACGTGGATAGTTGGGTGAACAAAGAGGACAATGTGACTTGTAGGTTTGACTCAGATGAAGACACCACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - tcacaac
- - - - - -ataccaa
- - - - - - - - - - - - - - - - - - - - - - - - - tcactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actccca