1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagggatttgatcatcaagattagccttctctctctctctctagatatctttcttgaatttagaaatctttatttaattatttggtgatgtcatatatagGATCAATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAGCAAGAAACTAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACAAATCG
species | Arabidopsis thaliana |
transcript | AT3G58780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTACCCACCTTCTCCTTTTTGCTGATCTATCGTAATCTTGAGAACTCAG GATCAATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAGCAAGAAACEST: gi|164189552|gb|ES209445.1|ES209445
genomic: ATTACCCACCTTCTCCTTTTTGCTGATCTATCGTAATCTTGAGAACTCAGgtaaggttgt ... tcatatatagGATCAATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAGCAAGAAAC
EST: ACCCACCTTCTCCTTTTTGCTGATCTATCGTAATCTTGAGAACTCAG GATCAATGGNGGAAGGTGGGAGTAGTCEST: gi|164163863|gb|ES188042.1|ES188042
genomic: ACCCACCTTCTCCTTTTTGCTGATCTATCGTAATCTTGAGAACTCAGgtaaggttgt ... tcatatatagGATCAATGGAGGAAGGTGGGAGTAGTC
EST: ACCCACCTTCTCCTTTTTGCTGATCTATCGTAATCTTGAGAACTCAG GATCAATGGAGGAAGGTGGGAGTAGTC
genomic: ACCCACCTTCTCCTTTTTGCTGATCTATCGTAATCTTGAGAACTCAGgtaaggttgt ... tcatatatagGATCAATGGAGGAAGGTGGGAGTAGTC
tatctttcttgaatttagaaatctttatttaattatttggtgatgtcatatatagGATCAATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAGCAAGAAACTAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACAAATCG
atttaat putative branch site (score: 4)
ttcttgaatttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagggatttgatcatcaagattagccttctctctctctctctagatatctttcttgaatttagaaatctttatttaattatttggtgatgtcatatatagGATCAATGGAGGAAGGTGGGAGTAGTCACGACGCAGAGAGTAGCAAGAAACTAGGGAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT