1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtgtatgtgtttatgagtactgaaacgtatctgtttatattccagttatccagtaattgttattttatatgaaaaggtttgttttttatgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATGCTATT
species | Arabidopsis thaliana |
transcript | AT3G55520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TACTATTCATCTCTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGAEST: gi|86027819|gb|DR323572.1|DR323572
genomic: TACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGAEST: gi|86027820|gb|DR323573.1|DR323573
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGAEST: gi|86027816|gb|DR323569.1|DR323569
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTTTCGTATCGGATCGAAYACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGGGAEST: gi|86027814|gb|DR323567.1|DR323567
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGAEST: gi|86027813|gb|DR323566.1|DR323566
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGAEST: gi|86027818|gb|DR323571.1|DR323571
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGAEST: gi|86027815|gb|DR323568.1|DR323568
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: TCTTCCGTTGTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
agttatccagtaattgttattttatatgaaaaggtttgttttttatgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATGCTATT
ttttttat CT-rich tract
taattgttattttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtatgtgtttatgagtactgaaacgtatctgtttatattccagttatccagtaattgttattttatatgaaaaggtttgttttttatgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGATGGTGGCGTCTTGAAAAAGATTGTAAGGAGTGCCAAACCTGATGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - -ctgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa