1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtccctactcttgaatcatttccaccattattgtttgagttgcttatgtttggctccattttcttattgtgttgtgttgaaatggatccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAGAATTGAAGGCAGAGCTTGCTTCCCTACGTGTCGCTAA
species | Arabidopsis thaliana |
transcript | AT3G55170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG GGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTAEST: gi|116477581|gb|EG520173.1|EG520173
genomic: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTA
EST: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTAEST: gi|19874839|gb|AU235670.1|AU235670
genomic: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTA
EST: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTAEST: gi|125272287|gb|EL286372.1|EL286372
genomic: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTA
EST: TAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGTTEST: gi|222358188|gb|GH717948.1|GH717948
genomic: TAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTT
EST: GTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTAEST: gi|124995210|gb|EL067479.1|EL067479
genomic: GTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTA
EST: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGEST: gi|124995125|gb|EL067394.1|EL067394
genomic: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGG
EST: ATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGTTEST: gi|124861635|gb|EH946072.1|EH946072
genomic: ATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTT
EST: ATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGGTTCATGAGTTGEST: gi|164132679|gb|ES011672.1|ES011672
genomic: ATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGGTTCATGAGTTG
EST: CTATAGCAGTGCAAAGAGATTGAGTCAGAGAGGGCTCGAAGACGCCATGG CGAGAATCAAGG
genomic: CTATAGCAGTGCAAAGAGACTGAGTCAGAGAGGGCTCGAAGACGCCATGGgtaagtccct ... ccgtgaacagCGAGAATCAAGG
cttatgtttggctccattttcttattgtgttgtgttgaaatggatccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAGAATTGAAGGCAGAGCTTGCTTCCCTACGTGTCGCTAA
attttcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtccctactcttgaatcatttccaccattattgtttgagttgcttatgtttggctccattttcttattgtgttgtgttgaaatggatccgtgaacagCGAGAATCAAGGTTCATGAGTTGAGAGATAAATCAAAATCGGATCTTTCTACTCAATTGAAAGAATTGAAGGCAGAGCTTGCTTCCCTACGTGTCGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT