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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actggaacctcttttgatgacttaagggttctgatttcaacattggaggttgtttagaaagtttcagtttttctaagttattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT

Basic information

species Arabidopsis thaliana
transcript AT3G54890.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54890.4 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA16G26130.1 (Glycine max), 3'ss of exon 1
--actggaacctcttttg-atgacttaagggttctgatttcaacattggaggttgtttagaaagtttcagtttttctaagt-tattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT
  |     || |  || | ||   |||  | || ||| |       |||   ||| |  ||  ||     ||| |  | |    ||  |  |   ||  | |||||||||||| || ||||| ||| | ||||| ||||| |||| ||| |||||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||
aaaaaatcactttgttggcatattttagtgattttgaatggtttggtgggttttggtgtgatggt---gatttatgcatgcacgttttgctct-tatgtttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT

upper sequence: AT3G54890.4 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA02G07180.1 (Glycine max), 3'ss of exon 1
actggaacctcttt-tgatgac----ttaag-ggttctgatttcaacattggaggttgtttagaaagtttcagtttttctaagt-tattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT
   | || | |||| |  || |    ||||| | || ||| |       |||   |||||  ||   | |   ||| |  | |    ||  || |   ||  | |||||||||||| || ||||| ||| | ||||| ||||| |||| ||| |||||||| | |||||||||||| ||||| ||||| |||||||| ||||| |||
---gaaatcactttgttgtggcatatttaagtgattttgaatggtttgctgggttttgttgtga---tgttgatttgtgcatgcacgttttgttct-tatgcttcagTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTACCAGAGAATCTTGAGAGGTTCAAAGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCT

upper sequence: AT3G54890.4 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv13s0019g04140.t01 (Vitis vinifera), 3'ss of exon 1
actggaacc-tcttttgatgacttaagggttctgatttcaacattggaggttgttta--gaaagtttcagtttttctaagttattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT
    |||   |   |  |    || |   || |  ||  | || | ||   |||||   |||| |||  ||   | |  |    |||     |  |  | |||||||||||| |||||||||||| | ||||| ||||| |||| ||| || |||||||| || || || || || |||||||| ||||||||||||||||||
gtaagaataatggatcaagtgtttgatatttatctttgaagcagtagatcatgtttgatgaaaattttggtggatgtgtg----tggtgtttatgtgtttcagTGACTTTGGATTTGACCCACTTCGGCTTGGTGAAGTCCCAGAGAATCTGGAGAGATATAAGGAATCCGAACTTATCCACTGCAGATGGGCTATGCTCGCT

upper sequence: AT3G54890.4 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: EFJ15021 (Selaginella moellendorffii), 3'ss of exon 1
actggaacctcttttgatgacttaagggttctgatttcaacattggaggttgtttagaaagtttcagtttttctaagttattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT
                               ||| || ||  ||  | |   | |||    | |||    ||  |||| |  | |        | | |||||||||||| || || ||||| ||||||||||||||||| |  ||||| ||  ||| ||| |||||||||||||||||||| |||||||| ||||| || 
------------------------------gtgagtttaaacttccaagagatctagtt--tctcatagcttacaagtgagagcgctttgtcct-tccagTGACTTTGGATTCGATCCACTGGGACTTGGAGAAGTTCCCGACAACCTGGAACGATTCAAGGAGTCAGAGCTCATCCACTGCAGATGGGCAATGCTGGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125280379|gb|EL294464.1|EL294464
EST:     CTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|116463834|gb|EG506426.1|EG506426
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124979196|gb|EL052275.1|EL052275
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTG
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTG
EST: gi|164212184|gb|ES156584.1|ES156584
EST:     CCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125146008|gb|EL181076.1|EL181076
EST:     GGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTACCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGG
genomic: GGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCT-CCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGG
EST: gi|124878450|gb|EH957887.1|EH957887
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTT
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTT
EST: gi|152035686|gb|BP861063.2|BP861063
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124888423|gb|EH967325.1|EH967325
EST:     CCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124881812|gb|EH960714.1|EH960714
EST:     TACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125206290|gb|EL221244.1|EL221244
EST:     CACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124988086|gb|EL060496.1|EL060496
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAG
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAG
EST: gi|124942999|gb|EL019215.1|EL019215
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTTG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAA
EST: gi|125088372|gb|EL147161.1|EL147161
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGCTCCAGCG
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCG
EST: gi|125251351|gb|EL265436.1|EL265436
EST:     CGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124853149|gb|EH937586.1|EH937586
EST:     TGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAAGTTCCAGCGAACCTTG
genomic: TGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAA-GTTCCAGCGAACCTTG
EST: gi|124707285|gb|EH798687.1|EH798687
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTT
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTT
EST: gi|124759971|gb|EH850101.1|EH850101
EST:     CGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125148828|gb|EL182296.1|EL182296
EST:     CGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|86077674|gb|DR373431.1|DR373431
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124979898|gb|EL052891.1|EL052891
EST:     ATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: ATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124771613|gb|EH861743.1|EH861743
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACC
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACC
EST: gi|124712777|gb|EH804179.1|EH804179
EST:     TTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|152035729|gb|BP862158.2|BP862158
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCT-GA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|116462138|gb|EG504730.1|EG504730
EST:     TGGATGCCCGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125290865|gb|EL304950.1|EL304950
EST:     CGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTG
genomic: CGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGAC-TTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTG
EST: gi|125134756|gb|EL175458.1|EL175458
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGC
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTT-GGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGC
EST: gi|125269951|gb|EL284036.1|EL284036
EST:     TGGATGCCTGGCGAGCCACGACCGGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGG
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGG
EST: gi|125137726|gb|EL177513.1|EL177513
EST:     CTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125028912|gb|EL101181.1|EL101181
EST:     GGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTCGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTC
genomic: GGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCT-GGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTC
EST: gi|125186805|gb|EL201759.1|EL201759
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGA
EST: gi|124922328|gb|EL000624.1|EL000624
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCAC
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCAC
EST: gi|125078845|gb|EL141075.1|EL141075
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|152034849|gb|BP838399.2|BP838399
EST:     TGGATGCCTGGCGAGC-ACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124838664|gb|EH923103.1|EH923103
EST:     CGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125271988|gb|EL286073.1|EL286073
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124867187|gb|EH951624.1|EH951624
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTT
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTT
EST: gi|124805028|gb|EH892485.1|EH892485
EST:     GGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTTGGACTTGGAGAAGTTCCAGCGAACCTTG
genomic: GGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCAC-TTGGACTTGGAGAAGTTCCAGCGAACCTTG
EST: gi|125323417|gb|EL337499.1|EL337499
EST:     TGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGG
genomic: TGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGG
EST: gi|125272970|gb|EL287055.1|EL287055
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTT
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTT
EST: gi|124729291|gb|EH820693.1|EH820693
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAG
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAG
EST: gi|124932976|gb|EL010184.1|EL010184
EST:     CTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124972044|gb|EL045764.1|EL045764
EST:     TGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|163982478|gb|ES184484.1|ES184484
EST:     GCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: GCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125144480|gb|EL180123.1|EL180123
EST:     CCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|164195329|gb|ES167805.1|ES167805
EST:     CCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TCGACTTTGGGTTTGACCCAACTTGGACTTGGAGAAGTTCCAGCGAACCTT
genomic: CCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagT-GACTTTGGGTTTGACCC-ACTTGGACTTGGAGAAGTTCCAGCGAACCTT
EST: gi|124968333|gb|EL042296.1|EL042296
EST:     GACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: GACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|125016503|gb|EL088772.1|EL088772
EST:     CGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: CGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|116462155|gb|EG504747.1|EG504747
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGA
EST: gi|124881176|gb|EH960078.1|EH960078
EST:     TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGG                         TGACTTTGGGTTTG
genomic: TGGATGCCTGGCGAGCCACGACCAGCTTACCTTGACGGTTCTGCTCCTGGgtacgcttcg ... cattgtgcagTGACTTTGGGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggttgtttagaaagtttcagtttttctaagttattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT
                      tttttctaagttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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actggaacctcttttgatgacttaagggttctgatttcaacattggaggttgtttagaaagtttcagtttttctaagttattgggtacaacattgtgcagTGACTTTGGGTTTGACCCACTTGGACTTGGAGAAGTTCCAGCGAACCTTGAGAGATACAAAGAGTCAGAGCTCATCCACTGTAGATGGGCTATGCTCGCT

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