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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtagtctcaattatgcttttatgtttttgaattcgtctctctgcgatgtgattttgtatttatgctgtttcaatctttgaatttgtatagCTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATATCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G54180.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084322|gb|DR380081.1|DR380081
EST:     TACTCATTATTCAACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTG                         CTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGC
genomic: TACTCATTATTCAACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTGgttagtagtc ... atttgtatagCTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGC
EST: gi|164143614|gb|ES022059.1|ES022059
EST:     GGTGTTGACATGTGGTCTGTTGGTTGTATCTTTG                         CTGAGATGGTTCGGAGGCAAGCTCTTT-CCCTGGTGATTCTGAGTTTCAGC
genomic: GGTGTTGACATGTGGTCTGTTGGTTGTATCTTTGgttagtagtc ... atttgtatagCTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGC
EST: gi|164076450|gb|ES133249.1|ES133249
EST:     ATTATTCGACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTG                         CTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGC
genomic: ATTATTCAACTGGTGTTGACATGTGGTCTGTTGGTTGTATCTTTGgttagtagtc ... atttgtatagCTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctgcgatgtgattttgtatttatgctgtttcaatctttgaatttgtatagCTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATATCTTCAG
             tgattttgtatttat  TA-rich tract