Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttcttcttatggtatggattctgaaaagaaatgatctgtcggtttaatccggtttaatttggtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G53990.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164151825|gb|EL969329.1|EL969329
EST:     CTCTCTGGCGATGAAGTCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGG
genomic: CTCTCTGGCGATGAA-TCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGG
EST: gi|164003671|gb|ES097660.1|ES097660
EST:     ACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACG
genomic: ACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACG
EST: gi|164130010|gb|EL987988.1|EL987988
EST:     CTCTCTGGCGATGAAGTCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCNTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTA
genomic: CTCTCTGGCGATGAA-TCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTC-TCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTA
EST: gi|164183771|gb|EL978833.1|EL978833
EST:     CTCTCTGGCGATGAAGTCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGA
genomic: CTCTCTGGCGATGAA-TCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGA
EST: gi|164187412|gb|EL983742.1|EL983742
EST:     CTCTCTGGCGATGAAGTCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTA
genomic: CTCTCTGGCGATGAA-TCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTA
EST: gi|163974278|gb|EL978272.1|EL978272
EST:     CTCTCTGGCGATGAAGTCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTACTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGG
genomic: CTCTCTGGCGATGAA-TCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCT-CTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGG
EST: gi|125270569|gb|EL284654.1|EL284654
EST:     ACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACG
genomic: ACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACG
EST: gi|164037213|gb|ES002152.1|ES002152
EST:     ACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTC                         CTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAA
genomic: ACTCTCTGGCGATGAATCTCGTAACTCCCTCTGGTTCAAATCCGGTTCTCgtaagtttct ... gtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctgaaaagaaatgatctgtcggtttaatccggtttaatttggtgcttgcagCTCTCATACCGTTGGCAGAGTTTAGGGAACCGGAGATTATGGAGAAATACGGTGTCAAAACCGACATCGCATGTCTTGATATGCTCGACACTGGTTCGAG
                                   gtttaat  putative branch site (score: 4)
                                    tttaattt  TA-rich tract