1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaattgtgtgattctgttcattttgttctttcaatggatttatcgtattggaactgttttggtaactgtgttgagattttgattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTA
species | Arabidopsis thaliana |
transcript | AT3G53870.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|124891327|gb|EH970229.1|EH970229
genomic: ACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: CAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86064308|gb|DR360065.1|DR360065
genomic: CAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|124755116|gb|EH845246.1|EH845246
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: ATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACEST: gi|116450432|gb|EG493024.1|EG493024
genomic: ATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTAC
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|47829794|gb|CK119478.1|CK119478
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|47832087|gb|CK121771.1|CK121771
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86064329|gb|DR360086.1|DR360086
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86067841|gb|DR363598.1|DR363598
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|116410822|gb|EG453414.1|EG453414
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|124857148|gb|EH941585.1|EH941585
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTEST: gi|86064321|gb|DR360078.1|DR360078
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCT
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|125218315|gb|EL232398.1|EL232398
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: TGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|125200536|gb|EL215490.1|EL215490
genomic: TGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACEST: gi|86067838|gb|DR363595.1|DR363595
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTAC
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86067839|gb|DR363596.1|DR363596
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGGGNGTTCTACGCTGAATTGAATGAGGNTCTTACAAGAEST: gi|86064275|gb|DR360032.1|DR360032
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|152035033|gb|BP842662.2|BP842662
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|116445202|gb|EG487794.1|EG487794
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|125062572|gb|EL130868.1|EL130868
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: CGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTEST: gi|86064306|gb|DR360063.1|DR360063
genomic: CGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTT
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86067837|gb|DR363594.1|DR363594
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|124968714|gb|EL042653.1|EL042653
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: ATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86064276|gb|DR360033.1|DR360033
genomic: ATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCANATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86064291|gb|DR360048.1|DR360048
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|116449038|gb|EG491630.1|EG491630
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|164157145|gb|ES105079.1|ES105079
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: GCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86064325|gb|DR360082.1|DR360082
genomic: GCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGRCGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|116454700|gb|EG497292.1|EG497292
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAEST: gi|86067836|gb|DR363593.1|DR363593
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
EST: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAG TTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
genomic: AGATTCTCACATTTGCAAACATGACGACTCAGATCAGCAAGAAGAGAAAGgtgaattgtg ... gattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGA
ggatttatcgtattggaactgttttggtaactgtgttgagattttgattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTA
attttgattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaattgtgtgattctgttcattttgttctttcaatggatttatcgtattggaactgttttggtaactgtgttgagattttgattttgtagTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG