1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctgagaaagcagagcaaagcccctttcttttggtgtttacttctgtggactaatgaaataaaaaaaccaaccttttttctcttttttctttgaccaaagGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAGTGCACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCA
species | Arabidopsis thaliana |
transcript | AT3G52190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACATCTTCTCTTTTGACCCCATTACTGCTTCTCTTTCCTCCTCTCCTTTG GCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAGTG
genomic: ACATCTTCTCTTTTGACCCCATTACTGCTTCTCTTTCCTCCTCTCCTTTGgtaaattttt ... ttgaccaaagGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAGTG
gtggactaatgaaataaaaaaaccaaccttttttctcttttttctttgaccaaagGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAGTGCACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCA
ccaaccttttttctct CT-rich tract
taatgaaataaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgagaaagcagagcaaagcccctttcttttggtgtttacttctgtggactaatgaaataaaaaaaccaaccttttttctcttttttctttgaccaaagGCAACACACACGCTTAAGGATAGTGATGGTGATCCTGTGGCTGTTTCAGTGCACCCTGGTGGGGATTACTTTGTTTGCTCAACCTCCAAAGGTGGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -gaaagca
- - - - - - - -caaagcc
- - - - - - - - - - - cctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa