1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttattctagaccggattgataaaattcaataggatgctatattattagatatagtcttaagagtatagttcaaaggagaatttggtatgtgattttcagGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACCGGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCAC
species | Arabidopsis thaliana |
transcript | AT3G51090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTAGCTTTG GTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAEST: gi|116476184|gb|EG518776.1|EG518776
genomic: TTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTAGCTTTGgtaataaccc ... tgattttcagGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATA
EST: TTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTAGCTTTG GTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATA
genomic: TTATCAAAACCAATGGGAAACGTTTGTTTCTTGTCGATACACTAGCTTTGgtaataaccc ... tgattttcagGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATA
ttagatatagtcttaagagtatagttcaaaggagaatttggtatgtgattttcagGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACCGGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCAC
ttttc CT-rich tract
tatagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattctagaccggattgataaaattcaataggatgctatattattagatatagtcttaagagtatagttcaaaggagaatttggtatgtgattttcagGTTAGGAGCTTAGAAGCACAAGGCCTGCCTTCAAAGCAAGCCGAGGCAATAACCGGTGCTATAACTGAAGTTCTTAACGATAGCTTAGGAGTTGTTTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - ctagacc
- - - - - - - - - -ataaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatttgg