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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttacaatgtgattggttccaagattattggaacatagaaatggttactgtttcattcgaaagatttgttctttgtgttgatacaatgtgttttcagATGACATCAGCTTTGTCGATTGAAGATGTTCGTCGAGAGGTGAAGTTGTTGAAAGCTTTGTCTGGGCATAGTCACATGGTTAAGTTCTATGATGTGTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G49370.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G49370.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 3'ss of exon 1
-gtttgttacaatgtgattggttc-caagattattggaacatagaaatg-gttactgtttcattcgaaagatttgttctttgtgttgatacaatgtgttttcagATGACATCAGCTTTGTCGATTGAAGATGTTCGTCGAGAGGTGAAGTTGTTGAAAGCTTTGTCTGGGCATAGTCACATGGTTAAGTTCTATGATGTGTTTG
  ||| ||    ||||| ||  ||  || |  | |  |   |   | |  |||  ||  |     |  ||  ||| |   |   || ||   || ||    ||||||||| ||||  |  ||||||||||||||||| | ||||||||  | || ||||||||||||| |||||   |  |||| || ||  | ||||  | ||
tttttctttttctgtgactgcatcataaaagcaattaattgttttactaagttggtgggtgggg-gtgagtattggtaactaaattaatgttatttgg---cagATGACAACAGCAATAGCGATTGAAGATGTTCGTAGGGAGGTGAAAATTTTAAAAGCTTTGTCTGTGCATAAGAATTTGGTCAAATTTCACGATGCATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttactgtttcattcgaaagatttgttctttgtgttgatacaatgtgttttcagATGACATCAGCTTTGTCGATTGAAGATGTTCGTCGAGAGGTGAAGTTGTTGAAAGCTTTGTCTGGGCATAGTCACATGGTTAAGTTCTATGATGTGTTTG
                                 tgttgat  putative branch site (score: 4)
                                              tgttttc  putative PPT
                 aaagattt  TA-rich tract