ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

Basic information

species	Arabidopsis thaliana
transcript	AT3G49010.1
intron #	1
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 1

-----ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtt-tcatcatttgatttaaagt-gtgtctgattgatgttttttggcagCT---TGAGTTGAAGAAA----TGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
      |   ||      |  |  ||| |   |  |  || ||   | | ||||   |||        |  | |||    | |||| ||  |||||      || |       |||  | |||||    ||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||           
atgtgctcgattgcgcgtgcatatggtctcgccgctgtatatc---gggttgttggtagtcgctgatgtgaggtttgtgttcgtgtttgtgtgatgcgcacagGTAAGAAGGAGAGGAGGAGAAAATGGTGAAGCACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC-----------

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os06g02510.2 (Oryza sativa), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatt-tgatttccttgagctgtttaaagtttcatcatttgat--ttaaagt--gtgtctgattgatgtttttt-ggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG----
      |  |   || ||   ||||          ||     ||||||||   |     |||   ||||  |||  ||  |||| || ||||| |  | | || |   | ||     |   ||||||||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |    
------taatctggtgtggatttttgctgcaactgttagtaagagctgttaggaagga-atcgcatgatgcttatggtttgtgtttgtttgatttggtgtaggtaagGTAAGCCATGG---TGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAG

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatt-tgatttccttgagctgtttaaagtttcatcatttgat--ttaaagt--gtgtctgattgatgtttttt-ggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
 ||   |  |   || ||   ||||          ||     ||||||||   |     |||   ||||  |||  ||  |||| || ||||| |  | | || |   | ||     |   ||||||||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||  
-ttcagtaatctggtgtggatttttgctgcaactgttagtaagagctgttaggaagga-atcgcatgatgcttatggtttgtgtttgtttgatttggtgtagGTAAGGTAAGCCATGG---TGAAGCACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCC-

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G081102_T03 (Zea mays), 3'ss of exon 1

-----------------ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
                   ||| || |       | ||| |  || || | |   ||    ||| | |     |||   ||   ||     |||||     | |        |  ||     |  |||    ||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||         
tggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgtt-gctcgtct----ctgctgatgccgtcactgttgcgttgttgatgtgtacaggtaagAAGGAGAGAAAG---AGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCA---------

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G409407_T01 (Zea mays), 3'ss of exon 1

--------------ttttgtttttgaagtt-tgaggttttatcatttg-atttccttgagctgtttaaagtttcatcatttgat--ttaaagtg-tgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
              |  || |  ||   |   |||| |  | | || |    ||| |  | |||| |  | |  || |  || |  ||  | ||  ||     | |     |  || ||     |  |||    ||||||||||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||              
tgcctgctttgatatcgtgctgctgggctaacgaggatggagctttggcggctccgtttgttgttca--gctggatgacgtggttattgcattgacgtgcagGTAAGAAGGTAAGGAAG---AGGGCGAAATGGTGAAGCACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC--------------

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 1

---ttttgtttttga-agtt---tgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttt--tttggcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
   |   | | |||  || |   |||   ||  ||   || | |   |     || |    |  |  | ||    || | ||| |  |  |||||||     |  | ||    ||  |  ||||||   ||||||||||| || |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||           
agatggagctgttggcagctcgttgattcttgttcccgtggtgtttgttgttcgtctcggctgacgccgttgctgttgatgtg-gcgttgttgatgtgcagGTAAGGAGAGGAAGAGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAAC-----------

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G081102_T01 (Zea mays), 3'ss of exon 1

----------------------ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
                        ||| || |       | ||| |  || || | |   ||    ||| | |     |||   ||   ||     |||||     | |        |  ||     |  |||    ||||||||||||| || |||||||| || |||||||| |||||||||||||| ||||||||||||||||||              
tagggtggagctggcggcagctcgttgattcttgttcccgtggtgtgctcgtt-gctcgtct----ctgctgatgccgtcactgttgcgttgttgatgtgtacagGTAAGAAGGAGAGAAAG---AGGGCGAAATGGTGAAGCACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTC--------------

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaa--gtttcatcatttgatttaaagtgt-gtc-tgattgatgttttttg-gcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
   ||||| |||   ||||  |  |||  ||    || |||| |||  |  ||     | || |  | || |||  ||| ||| ||  |||  | || || | |   | ||   |||  |||   ||||| |||||||||||||||||||| ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||   
---tgtttgtga---ttgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaagGTAAGCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCA--

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA04G14640.1 (Glycine max), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagt--ttcatcatttgatttaaagtgt-gtc-tgattgatgttttttg-gcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG---
             | ||||  |  |||  ||    || |||| |||  |  || |   | || |  | || |||  ||| ||| ||  |||  | || || | |   | ||   |||  |||   ||||| |||||||||||||||||||| ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||  |   
-----------gtgattgatctgctatggttacgctttcttgtgcttatccaattaccttattacataatctaacttgttgtcgtggatgacctgttatgtgtaaggtaagCCAAAGCCATGGTTAAGCATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAA

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA09G34760.3 (Glycine max), 3'ss of exon 2

-ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgt-gtc-tgattgatgttttttggcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG
 ||   | || |   | ||   |||||   | |  | | |||   || ||       | || |  | || |||  ||| ||| || ||||  ||  |  | |   | ||   ||   |||   ||||| |||||||||||||| || || ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||   
gttgattgttagttatctgctattttacactatcttgtgcttatcctatt----accttattacataatctaacctgttgtcgtggttgactttaatgtgtaagGTAAGCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCA--

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA09G34760.4 (Glycine max), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgt-gtc-tgattgatgttttttggcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG---
  |||||  | |  | ||   |||||   | |  | | |||   || ||       | || |  | || |||  ||| ||| || ||||  ||  |  | |   | ||   ||   |||   ||||| |||||||||||||| || || ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||  |   
--ttgttagtta--tctgctattttacactatcttgtgcttatcctatt----accttattacataatctaacctgttgtcgtggttgactttaatgtgtaaggtaagCCAAAACCATGGTTAAGCATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAA

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtg-tctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG----
  | || ||| || |  |   |        ||  | |  |  |  || | | |  || | | | |  |||    |||  | | |||| |||  ||||   |   ||  ||      | ||||| ||||| |||||||||||||| |||||||  || |||||||| || ||||| ||||| ||||| || || || ||  |    
catagtattttaattggggtttgcagctgatttgtcttttatacatgatcatatgttgaccctgttgttttttttgttcttttattgttgtcatttgtagGTAAGATATGG-----TTAAGCATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAG

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 1

--ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaa-agtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG----
  |||| |  || |  |||  |  ||| |  |  | | |  |    | |    || |  ||  |||||   |   | | ||| ||  || ||   |||    |  | ||     |   | ||||| ||||||||| | || ||||| |||||||| || || ||||||||||||||||| || ||||| ||||| |||||  |    
tcttttttcattcagatttttgtgtttcttttgagttattttgtgacggagctaaatcgcaaaatttgtgatggtattttgtttg--tgctgccatttacagG--TAAGCCATGG---TTAAGCATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAA

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 3'ss of exon 1

--ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-
    |     |||| | || ||   ||  |||      |  |      |||||    |     |    |     || || |||||| | ||||  | |   |  |      | |   ||||||| ||||| || || ||||||||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||  | 
gccctccgccttgatgcttcagtagtttgcatggtgcattgtatcagggtttaggtctgtgggaaaaaaaacgtagggtttctgat-ggtgttgctcgcagGTCTAGCACCATGG--TGAAGCATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGC

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 3'ss of exon 1

---------------------------------------------------------------------------------------------ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgat-ttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATG---AAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-
                                                                                             |  | | |   |||||        ||  |   ||     |  || | |    ||     |   | | | || | || |      ||  || |  |   ||    | |  |||   |||   ||||| |||||||| ||||| || || || ||||| ||| ||||||| || ||||| | ||| |||||||||||||| ||  | 
gtgtgcctcgccgctcatcttaacattgtacagcttcataggcttccagttgggaaggagtttgtggttgcttgtgcaattccttgtgggagatggtctgtccaaagttcttccccctaa-acgggaggcgatctagttctcctgaggggtgtgcatggttgttgatgtatactaagtttttggtcatcaccactcagGGACGAAACCATGGTGAAGCATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGC

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S459_9V6.2 (Physcomitrella patens), 3'ss of exon 1

------------------------------------------------------------------------ttttgtttttgaagtttgaggtttta--tcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGA----AATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-
                                                                         ||| |||  | ||  |   | |  |  |||  |      ||  ||  |  | | ||||  | | ||  ||| | |        | || |  |  |    | | |  |   |  |      ||||||| |||||||| |||||||| ||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||  | 
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtt--tttcatgcccactaaactgcttgtcgtgaaaaacgtagGACCAGAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGC

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S459_9V6.1 (Physcomitrella patens), 3'ss of exon 1

------------------------------------------------------------------------ttttgtttttgaagtttgaggtttta--tcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGA----AATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-------
                                                                         ||| |||  | ||  |   | |  |  |||  |      ||  ||  |  | | ||||  | | ||  ||| | |        | || |  |  |    | | |  |   |  |      ||||||| |||||||| |||||||| ||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||  |       
gtatgctggcttgctttcctttgcattgcacagctgcgtaaggttgtggctggggatcgtgctgtaagactcatttctttcaggagaattcagctggagctcagcttcggagctgaaggcgacttaggtttgtttagtt--tttcatgcccactaaactgcttgtcgtgaaaaacgtaggaccagAATCATGGTGAAGCATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAG

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 3'ss of exon 1

ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgtttaaagtttcatcatttgatttaaagtg-tgtctga-ttgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG-
|| || |   |  |  ||  | | |     |||  |  | |      | ||  |||| |   |||     | |  | |||| || | | | | ||||    | | |       |   ||||||| || |||||||||||||||||||||||||| ||| |||||||||| ||||| | ||| |||||||||||||| ||| | 
ttgtgatggagtggcgtgccgatgttgttcttgtctcgcattcctcatatagggtttaagggtttatgacataacgatgtcggagtcggtctattttcagGGTTGGCACCATGG---TGAAGCATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGC

upper sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 3'ss of exon 1

--ttttgtttttgaagtttgaggttttatcatttgatttccttgagctgt--ttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG--
  |  ||   | |    ||   || || |  ||  | ||| |  |||  |  |||  ||   ||  ||    |   | | | | ||||   ||| | |    || |  |          ||||||| |||||||||||||||||||| |||||||| ||| ||||||| || ||||| | ||| ||||| |||||||| ||| |  
tgtgatggagtggcgtatttttgtgttgttgttgtaattcgtgaagcaataattagggtcggattgttgatgtcgcaatttttgtgat--gtgtatgtgaagAGTTGAAAC----ATGGTGAAGCATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|86018573|gb|DR314319.1|DR314319

EST:     GTGTTCTGCTGCTAGCTCCT                         CTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCA
genomic: GTGTTCTGCTGCTAGCTCCTgtagattttt ... tttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCA

EST: gi|86018574|gb|DR314320.1|DR314320

EST:     GTAGGGTTCTTGCTTGTTTTCTCTCATCGTGTGTTCTGCTGCTAGCTCCT                         CTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCA
genomic: GTAGGGTTCTTGCTTGTTTTCTCTCATCGTGTGTTCTGCTGCTAGCTCCTgtagattttt ... tttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCA

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

tgtttaaagtttcatcatttgatttaaagtgtgtctgattgatgttttttggcagCTTGAGTTGAAGAAATGAAGCACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAG

                                    gattgat  putative branch site (score: 4)
                                          tgtttttt  CT-rich tract
             atcatttgatttaaa  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns