1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattttaagaggttttcatatatttcgatttaaaagcttcgtttctggttttgttttgcgtgctgaagaatcacatgggaagcagaatttatgaatatctgtaaatcgcttcttaattgagaaattttgatttccggattcagatgatttttttggatgaatttggttttgattttttttttttgttttcagTTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCGTTGAACGCAGCGTACACGGCGGAGGAATTTGAGTTTTACCTCTCCGATT
species | Arabidopsis thaliana |
transcript | AT3G48990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAG TTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCGEST: gi|116453489|gb|EG496081.1|EG496081
genomic: GAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGgtattttaag ... ttgttttcagTTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCG
EST: GAATCAAACTCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAG TTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCG
genomic: GAATCAAACCCGGCGATGTCGTTGCTCTCACCTTCCCTAACACCGTCGAGgtattttaag ... ttgttttcagTTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCG
attcagatgatttttttggatgaatttggttttgattttttttttttgttttcagTTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCGTTGAACGCAGCGTACACGGCGGAGGAATTTGAGTTTTACCTCTCCGATT
ttttgat putative branch site (score: 4)
ttttgatttttttttt CT-rich tract
aatttggttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttaagaggttttcatatatttcgatttaaaagcttcgtttctggttttgttttgcgtgctgaagaatcacatgggaagcagaatttatgaatatctgtaaatcgcttcttaattgagaaattttgatttccggattcagatgatttttttggatgaatttggttttgattttttttttttgttttcagTTTGTTATAATGTTTTTAGCGGTGATAAGAGCTAGAGCCACGGCGGCGCCGTTGAACGCAGCGTACACGGCGGAGGAATTTGAGTTTTACCTCTCCGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA