1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgtcgaagacttttcaatctcatgcatgattttgatgttcactcagagagaatattccacgaatttccaaaaaagacccttaattctgttgttatttcagATTGATCCACTGAAGTACAAGAACATAACTTCAGCTTTCAAGACAACAATCAAAGAGCAAGGGCTTAAGGGTTTCACCAGAGGCTGGTCACCAACGCTTC
species | Arabidopsis thaliana |
transcript | AT3G48850.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACCCACACGGCGATTACGCCACTTGATGTCATCAAATGCAACATGCAG ATTGATCCACTGAAGTACAAGAACATAACTTCAGCTTTCAAGACAACAATC
genomic: TCACCCACACGGCGATTACGCCACTTGATGTCATCAAATGCAACATGCAGgtgaaagttc ... gttatttcagATTGATCCACTGAAGTACAAGAACATAACTTCAGCTTTCAAGACAACAATC
gagagaatattccacgaatttccaaaaaagacccttaattctgttgttatttcagATTGATCCACTGAAGTACAAGAACATAACTTCAGCTTTCAAGACAACAATCAAAGAGCAAGGGCTTAAGGGTTTCACCAGAGGCTGGTCACCAACGCTTC
ccttaat putative branch site (score: 4)
ttatttc putative PPT
ttgttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtcgaagacttttcaatctcatgcatgattttgatgttcactcagagagaatattccacgaatttccaaaaaagacccttaattctgttgttatttcagATTGATCCACTGAAGTACAAGAACATAACTTCAGCTTTCAAGACAACAATCAAAGAGCAAGGGCTTAAGGGTTTCACCAGAGGCTGGTCACCAACGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - -aatctca
- - - - - - - - - - - - - -gattttg
- - - - - - - - - - - - - - - - - - - tcactca
- - - - - - - - - - - - - - - - - - - - - - - agagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttaa