1 5' 3' | 2 5' 3' | 3 5' 3' |
...caattaaagcatgttcttggacaaaattgggaaactctgagcttaaaactctttaagattttggttaaacgttttgagaaaatgtatattgccaatgtagGTTTTGAATGCTGAGTCTAAATCAATTGAGAATGCTATAAGATGTGGAGGATTGGCACCGAAAAAGGCGGTGTGTATCAAGAACATATTGAACCGTTTGC
species | Arabidopsis thaliana |
transcript | AT3G47830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaactctttaagattttggttaaacgttttgagaaaatgtatattgccaatgtagGTTTTGAATGCTGAGTCTAAATCAATTGAGAATGCTATAAGATGTGGAGGATTGGCACCGAAAAAGGCGGTGTGTATCAAGAACATATTGAACCGTTTGC
agaaaatgtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caattaaagcatgttcttggacaaaattgggaaactctgagcttaaaactctttaagattttggttaaacgttttgagaaaatgtatattgccaatgtagGTTTTGAATGCTGAGTCTAAATCAATTGAGAATGCTATAAGATGTGGAGGATTGGCACCGAAAAAGGCGGTGTGTATCAAGAACATATTGAACCGTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-aattaaa
- - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - -aaactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaa