1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttgtctttaggcgattgatagtcttgaaatcttagagactcggtttctggttaatacctaggttgatgttgtagctttttgtctttgtattgttgcagGTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTTGACCG
species | Arabidopsis thaliana |
transcript | AT3G46820.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAACAGCCTTGTCTTCTTGAGCTCGCTGCCCCTGTTAAGATCTGCG GTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAGEST: gi|86040368|gb|DR336123.1|DR336123
genomic: TCTTCAACAGCCTTGTCTTCTTGAGCTCGCTGCCCCTGTTAAGATCTGCGgtattttact ... attgttgcagGTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAG
EST: TCTTCAACAGCCTTGTCTTCTTGAGCTCGCTGCCCCTGTTAAGATCTGCG GTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAG
genomic: TCTTCAACAGCCTTGTCTTCTTGAGCTCGCTGCCCCTGTTAAGATCTGCGgtattttact ... attgttgcagGTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAG
tttctggttaatacctaggttgatgttgtagctttttgtctttgtattgttgcagGTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTTGACCG
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtctttaggcgattgatagtcttgaaatcttagagactcggtttctggttaatacctaggttgatgttgtagctttttgtctttgtattgttgcagGTGATATTCATGGTCAATACTCAGATTTATTGAGGCTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTTGACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - tgaaatc