Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttttattttttctttattatagctaagtatgtcaaaaacattttattttcagatatgtatggaaaaaaaagttgactcgttgtgtgtgggttattcttgttccaggcatgtctagattgtggatttttctatgtcacaaatcatggtataagtgaggagttgaaggacgaggcttttgagcagAGCAAGAAGTTCTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGAAATGAAAAGCATCGAGGCTATTCACCCGTCCTTGATCAAATTTTAGATC

Basic information

species Arabidopsis thaliana
transcript AT3G46480.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G46480.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA01G01170.2 (Glycine max), 3'ss of exon 1
gtatgtttttattttttctttattatagctaagtatgtcaaaaa-cattttattttcagatatgtatggaaaaaaaagttgactcgttgtgtgtgggttatt--cttgttccaggcatgtctagattgtggatttttctatgtcacaaatcatggtataagtgaggagttgaaggacgaggcttttgagcagAGCAAGAAGTTCTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGAAATGAAAAGCATCGAGGCTATTCACCCGTCCTTGATCAAATTTTAGATC
    ||||||  ||  |||||   ||   |     ||||| ||  || ||| |||| |||     ||        | ||   ||   |||   ||  || ||   |||||  |||||||| | ||||  || |||||||| ||    |||||||| |||||  |||| || | |||||||| ||||| ||||||||||||||||||  ||||||                                                                              
----gtttttgcttcctcttttacatgatt-----tgtcacaattcactttgtttttagaccatgatctttttttatgtcatcttaatgttgttgtttttttgctttgttttagGCATGTTTGGATTCCGGTTTTTTCTACGTTGTCAATCATGGAATAAGCCAGGAATTCATGGACGAGGTTTTTGCGCAGAGCAAGAAGTTCTTCTCTCTTC------------------------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgtcacaaatcatggtataagtgaggagttgaaggacgaggcttttgagcagAGCAAGAAGTTCTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGAAATGAAAAGCATCGAGGCTATTCACCCGTCCTTGATCAAATTTTAGATC
                                            ctttt  CT-rich tract
         aaatcat  TA-rich tract