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gtaaatactcctctcgaaccctttctttaatcggaatcttctttttctctgttgtttgattcgattttttttttctcaaaaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTC
species | Arabidopsis thaliana |
transcript | AT3G46440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATCACAAAGTTTTCGTTTTTTAGGGTTCTCTCATCGATCTC GGTTTGTGATCTTCTTCTTCATCAATGGCGTCEST: gi|116473065|gb|EG515657.1|EG515657
genomic: AGATCACAAAGTTTTCG-TTTTTAGGGTTCTCTCATCGATCTCgtaaatactc ... aaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTC
EST: AGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTC GGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGCEST: gi|164234261|gb|EL984118.1|EL984118
genomic: AGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTCgtaaatactc ... aaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGC
EST: AGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTC GGTTTGTGATCTTCTTCTTCATCAATGGCGTCEST: gi|19876171|gb|AU237002.1|AU237002
genomic: AGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTCgtaaatactc ... aaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTC
EST: CTCTCTTCAGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTC GGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGC
genomic: CTCTCTTCAGATCACAAAGTTTTCGTTTTTAGGGTTCTCTCATCGATCTCgtaaatactc ... aaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGC
aatcttctttttctctgttgtttgattcgattttttttttctcaaaaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTC
gtttgat putative branch site (score: 5)
attcgatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatactcctctcgaaccctttctttaatcggaatcttctttttctctgttgtttgattcgattttttttttctcaaaaaaattcagGGTTTGTGATCTTCTTCTTCATCAATGGCGTCTAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAAGTTTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC