1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtttcaagtagtgaagataaattggtttgaagctttgtttctgtgtagagaaatggagtaagtgaaacactaatggtaaatcttgttttgtgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTACTGGAAAGG
species | Arabidopsis thaliana |
transcript | AT3G44890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAG GTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGEST: gi|124861512|gb|EH945949.1|EH945949
genomic: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtca ... tgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGG
EST: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAG GTAATTTTGAAAGAGGATGTEST: gi|125243171|gb|EL257256.1|EL257256
genomic: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtca ... tgtctttaagGTAATTTTGAAAGAGGATGT
EST: GAAGAAAGCTAAGAAACTTCGCAAG GTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTT
genomic: GAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtca ... tgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTT
tagagaaatggagtaagtgaaacactaatggtaaatcttgttttgtgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTACTGGAAAGG
cactaat putative branch site (score: 2)
tgtcttt putative PPT
taaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcaagtagtgaagataaattggtttgaagctttgtttctgtgtagagaaatggagtaagtgaaacactaatggtaaatcttgttttgtgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTTGATGTGAAAGCTGGATTTTTCAGAAACTTCCTCTTGCCTACTGGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - agataaa
- - - - - - - - - - - -ggtttga
- - - - - - - - - - - - - - - - - - - - - - - agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacact