1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gctttcagattttggtggatgtaatgtggttgtaaattaggagcagtggagactttggaatttatgtttctgatttgtgaaaatgttggttttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTTCAGAGAAT
species | Arabidopsis thaliana |
transcript | AT3G44620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAG GGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTEST: gi|124831658|gb|EH916097.1|EH916097
genomic: TCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAGgtatgataat ... tttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATT
EST: TTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAG GGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTEST: gi|124992610|gb|EL064879.1|EL064879
genomic: TTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAGgtatgataat ... tttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATT
EST: GAACAATTGATTATCACGAG GGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTEST: gi|116425046|gb|EG467638.1|EG467638
genomic: GAACAATTGATTATCACGAGgtatgataat ... tttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATT
EST: TCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAG GGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATT
genomic: TCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTGATTATCACGAGgtatgataat ... tttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATT
gtggagactttggaatttatgtttctgatttgtgaaaatgttggttttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTTCAGAGAAT
ttctgat putative branch site (score: 3)
tttttt putative PPT
ttggttttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttcagattttggtggatgtaatgtggttgtaaattaggagcagtggagactttggaatttatgtttctgatttgtgaaaatgttggttttttaaaagGGGAATATGGCGGATCCAAGAATGAGAAGTGCTGCGAAACGTCGCGGGATTGAGATAACATCACTATCCAGACCGATCAAGGCATCTGATTTCAGAGAAT
- - - -gattttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatg