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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttcaacttttctctccttccttaaaccttatgaattctctgtgtcctgaattctgactagtgtcaagttttcaactttctatacagTAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G43540.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125032517|gb|EL104786.1|EL104786
EST:     CTTTTCTCAGTTGGTCACAG                         TAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGAT
genomic: CTTTTCTCAGTTGGTCACAGgtgttcaact ... ttctatacagTAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGAT
EST: gi|125320703|gb|EL334788.1|EL334788
EST:     TTGAAGCCTGGAGATTTAGCTGACCTTCCTCTTTTCTCAGTTGGTCACAG                         TAATGGTGCACTGCTCCA
genomic: TTGAAGCCTGGAGATTTAGCTGACCTTCCTCTTTTCTCAGTTGGTCACAGgtgttcaact ... ttctatacagTAATGGTGCACTGCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattctctgtgtcctgaattctgactagtgtcaagttttcaactttctatacagTAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATACCAAAG
                   ttctgac  putative branch site (score: 2)
                                           ctttctat  putative PPT
                                            tttctata  TA-rich tract