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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatttcactatcttctcagatctttctgcttctagtgattgttatcttctccgatctatgttcaatttcctaattgatttgagtttttgcttttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG

Basic information

species Arabidopsis thaliana
transcript AT3G42790.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069050|gb|DR364807.1|DR364807
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGTGACCCTG
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG
EST: gi|86069046|gb|DR364803.1|DR364803
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGTGACCCTG
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG
EST: gi|125064040|gb|EL131805.1|EL131805
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTT
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTT
EST: gi|125256304|gb|EL270389.1|EL270389
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGTGACCCTGAGA
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTGAGA
EST: gi|124905636|gb|EH979716.1|EH979716
EST:     CCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGTGACCCTG
genomic: CCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG
EST: gi|86069047|gb|DR364804.1|DR364804
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGTGACCCTG
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG
EST: gi|125043921|gb|EL116190.1|EL116190
EST:     GCTCTCACCACCG                         ATGTTCAAGAGTTTTACCTAACAATGTGACCCTG
genomic: GCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACC-AACAATGTGACCCTG
EST: gi|116471935|gb|EG514527.1|EG514527
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGTGACCCTG
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG
EST: gi|125072269|gb|EL137022.1|EL137022
EST:     CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCG                         ATGTTCAAGAGTTTTACCAACAATGT
genomic: CAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGgtaaaaattt ... tttcttgcagATGTTCAAGAGTTTTACCAACAATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctccgatctatgttcaatttcctaattgatttgagtttttgcttttcttgcagATGTTCAAGAGTTTTACCAACAATGTGACCCTG
                                     tttttgcttttcttgc  CT-rich tract
                        taattgattt  TA-rich tract