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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagattgtgatgatttgagatggattcgaattctgttcttcgattttttttggttttgactgagaaatttaatcttttgcagAGATGGGTCAGTGATAAAGATGAAAACAAGTGCTTCTTCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG

Basic information

species Arabidopsis thaliana
transcript AT3G28480.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86032586|gb|DR328339.1|DR328339
EST:     CTAATTTCATCTGCACCTAACCGCTTCCTCACTAGATCGAGTAACACTAG                         AGATGGGTCAGTGATAAA
genomic: CTAATTTCATCTGCACCTAACCGCTTCCTCACTAGATCGAGTAACACTAGgttagattgt ... tcttttgcagAGATGGGTCAGTGATAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattctgttcttcgattttttttggttttgactgagaaatttaatcttttgcagAGATGGGTCAGTGATAAAGATGAAAACAAGTGCTTCTTCTTTTGGGTTTGATCCAACTCGTGTCACTCAACTCTCTTGGACTCCTAG
                                             tcttttgc  CT-rich tract
                                   agaaatttaatctttt  TA-rich tract