1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtatcaagaatcaaagctacttaatcttaacactaatatctctatatgtaaatcaattaagctacttttaactcctctgcagAGACAGTTTTTGATCTGGGTTTTCAAGTCCGGTGTTGATCCCATTGAGTTTCGGATCTAAAAGATCCGAATATTCAGACGGATCAACAAGAGAACAAGAA
species | Arabidopsis thaliana |
transcript | AT3G27770.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAAC AGACAGTTTTTGATCTGGGTTTTCAAGTCCGGTGTTGATCCCATTGAGTTTEST: gi|124968354|gb|EL042316.1|EL042316
genomic: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAACgtaagtatca ... tcctctgcagAGACAGTTTTTGATCTGGGTTTTCAAGTCCGGTGTTGATCCCATTGAGTTT
EST: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAAC AGACAGTTTTTGATCTEST: gi|125286975|gb|EL301060.1|EL301060
genomic: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAACgtaagtatca ... tcctctgcagAGACAGTTTTTGATCT
EST: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAAC AGACAGTTTTTGATCTGGGEST: gi|125279319|gb|EL293404.1|EL293404
genomic: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAACgtaagtatca ... tcctctgcagAGACAGTTTTTGATCTGGG
EST: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAAC AGACAGTTTTTG
genomic: CACACAACAACAAGAACAAGGACAAGCTTCTACATTTCTCTTAACATAACgtaagtatca ... tcctctgcagAGACAGTTTTTG
taacactaatatctctatatgtaaatcaattaagctacttttaactcctctgcagAGACAGTTTTTGATCTGGGTTTTCAAGTCCGGTGTTGATCCCATTGAGTTTCGGATCTAAAAGATCCGAATATTCAGACGGATCAACAAGAGAACAAGAA
ttttaac putative branch site (score: 2)
cttttaactcctct CT-rich tract
taatatctctatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcaagaatcaaagctacttaatcttaacactaatatctctatatgtaaatcaattaagctacttttaactcctctgcagAGACAGTTTTTGATCTGGGTTTTCAAGTCCGGTGTTGATCCCATTGAGTTTCGGATCTAAAAGATCCGAATATTCAGACGGATCAACAAGAGAACAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA