Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggtcagcttttgatctttgtgcaatgatgtctgtgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC

Basic information

species Arabidopsis thaliana
transcript AT3G24830.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA09G02790.1 (Glycine max), 3'ss of exon 1
atggtcagcttttgatctttgtgcaatgatgtctgtgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtca-----tttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
   |  ||     ||  |   |  |  ||  |  | | |    |  |   ||||   | |    ||  ||  |  |||| | |||| | ||       |||  || ||||| ||||||||||| |||||||| |  ||||||||||| ||||||||||| | ||| ||| | || ||||| |||||||||  |||||||||||| 
-cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatt----tgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT

upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA15G13670.1 (Glycine max), 3'ss of exon 1
-----atggtcagcttttgatctttgtgcaatgatgtctgtgttagg---aattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtca----tttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
        ||||  ||||| | ||  |           ||| | |     | ||  || | | | |  ||   | |   ||||   | | |||  ||||      |||  || ||||| ||||||||||| |||||||| |  ||||||||||| ||||||||||| | ||| ||| | || ||||| |||||||||  |||||||||||| 
gtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT

upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G46860.1 (Glycine max), 3'ss of exon 1
atggtcagcttttg-atctttg--tgcaatgatgtctgtgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
||     |||  ||  | | ||  ||  || |||    ||| | |||   ||    || |  ||||  | | | |||  ||   |    |||||  ||| ||||||||| ||||||||||| ||||| || |  ||||||||||| || |||||||||| ||||||  | || |||||||||||||||  |||||| ||||| 
atttggggctaatgtgtttatggttgacattatgaacttgtaatgaagattactggtgttgttgtg--gaaagttttctaagacggatgtttgt-gtttgcagGATGATACCACACAAGACAAAGCGCGGGGAAGCTGCTCTTGCGCGATTGAAGGTGTATGAGGGCATTCCTCCTCCTTATGACAAGACCAAGAGGATGGTT

upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA16G13580.1 (Glycine max), 3'ss of exon 1
atggtcagcttttga-tctttgtgcaatgatgtctgtgttagga-attgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
  | |    |   || | |||||  | | || ||| | | | |  |   |   ||| ||  |||  |||           | |||   ||     | |  || ||||| ||||||||||| |||||||| |  || ||||| || ||||||||||| | ||||||| | || ||||| ||||||||| | ||||||||||| 
gagattgattgaagaatttttgtatact-atatctatctgaaggtaggatggatttaatt-tgttgtgggaagggaaggttctgaaatttctgtttctgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCCGCTCTCGCTCGTTTGAAGGTTTATGAGGGAATTCCTCCTCCATATGACAAGATAAAGAGAATGGTT

upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G46850.1 (Glycine max), 3'ss of exon 1
atggtcagcttttgatctttgtgcaatgatgtctg-tgttaggaa-ttgtat----gtttgatagtgtgatggaggatttga-aatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
      |   | ||    |  ||   | |||  ||   ||| ||| |||||     | ||  | ||||  ||||   |||    |   |    |||||  | | ||||||||| ||||||||||| ||||| || |  ||||||||||||||  |||||||||  |||||  | || |||||||||||||||  |||||| ||||| 
------attatatggggctaatgtgtttatggttggcattatgaacttgtaatgaagattactggtgttgtggaaagttttctgagaaggatgtttgt-gtctgcagGATGATACCACACAAGACAAAGCGCGGGGAAGCTGCTCTTGCACGACTGAAGGTGTACGAGGGCATTCCTCCTCCTTATGACAAGACCAAGAGGATGGTT

upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 3'ss of exon 1
---atggtcagcttttgatctttgtgcaatgatgtctgtgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
    ||||     |    |   |   |     |   |    ||   |   ||  ||  | | |||  |  | || ||    | || |  | | | |||   ||||||||||| ||||||||||||||||| || || || |||||||| |||||||  | ||||||| | || || || ||||| ||| | ||||| ||||||
attttggtgcctgtacctttccttcacttcattaggtaccatacagagcttaatttcaacactgtttttaatgaatttt--tttggttttgttttatt-gtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTC

upper sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: PP1S165_40V6.1 (Physcomitrella patens), 3'ss of exon 2
atgg-tcagcttttgatctttgtgcaatgatgtctg-tgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
|| | |      |   |||||        |  |||| |  |   |     ||   |  |   | | ||   ||   ||    |  | ||   ||  ||  || ||||| || |||||||||||| | ||||||||||||||||  || |||||||  ||||| ||||| ||  | || ||||||||| | || |||||||| 
atagcttgagagtcagtcttttccatccaacttctgattcttccacccaaatagctattgaagggctg--agacccgactgattcttataaatctgttgtagAATGATCCCTCACAAGACCAAGAGGGGTGCTGCTGCTCTTGAGCGCTTGAAGGCCTTTGAAGGAGTCCCTGCACCGTATGACAAGATGAAAAGAATGGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163978272|gb|ES064967.1|ES064967
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTT
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTT
EST: gi|86064141|gb|DR359898.1|DR359898
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|164213523|gb|ES049956.1|ES049956
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACAC
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACAC
EST: gi|116457624|gb|EG500216.1|EG500216
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|164181405|gb|ES098969.1|ES098969
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAA
EST: gi|124859168|gb|EH943605.1|EH943605
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGC
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGC
EST: gi|116445907|gb|EG488499.1|EG488499
EST:     TCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: TCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86064138|gb|DR359895.1|DR359895
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116457623|gb|EG500215.1|EG500215
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|164081327|gb|EL972325.1|EL972325
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTG
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTG
EST: gi|125072998|gb|EL137491.1|EL137491
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86086265|gb|DR382024.1|DR382024
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|125245166|gb|EL259251.1|EL259251
EST:     TTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAG
genomic: TTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAG
EST: gi|86064135|gb|DR359892.1|DR359892
EST:     TATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: TATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86064134|gb|DR359891.1|DR359891
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86078574|gb|DR374331.1|DR374331
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|163971849|gb|ES147453.1|ES147453
EST:     TTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: TTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|164006071|gb|ES015925.1|ES015925
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGC
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGC
EST: gi|116443797|gb|EG486389.1|EG486389
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAACGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|125032565|gb|EL104834.1|EL104834
EST:     TTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTT
genomic: TTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTT
EST: gi|125037084|gb|EL109353.1|EL109353
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCAC
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCAC
EST: gi|164154344|gb|ES117067.1|ES117067
EST:     TTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTAGCTGCTGCTCTTGCACGTTTGA
genomic: TTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGT-GCTGCTGCTCTTGCACGTTTGA
EST: gi|86064136|gb|DR359893.1|DR359893
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|164024421|gb|ES151078.1|ES151078
EST:     TAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: TAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116391668|gb|EG434260.1|EG434260
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86081584|gb|DR377341.1|DR377341
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116457638|gb|EG500230.1|EG500230
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86064132|gb|DR359889.1|DR359889
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86082055|gb|DR377814.1|DR377814
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|164016273|gb|ES185948.1|ES185948
EST:     ACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: ACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|124742031|gb|EH833193.1|EH833193
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACA
EST: gi|86084454|gb|DR380213.1|DR380213
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|163986836|gb|ES114058.1|ES114058
EST:     ACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: ACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|125271155|gb|EL285240.1|EL285240
EST:     CCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116457615|gb|EG500207.1|EG500207
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116457620|gb|EG500212.1|EG500212
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116457619|gb|EG500211.1|EG500211
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|116457632|gb|EG500224.1|EG500224
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCATACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|124880476|gb|EH959378.1|EH959378
EST:     CGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86064137|gb|DR359894.1|DR359894
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|124923263|gb|EL001474.1|EL001474
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGTACCAAGCGTGGTGCTGCTGCTCTTGCA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAG-ACCAAGCGTGGTGCTGCTGCTCTTGCA
EST: gi|164053131|gb|ES196777.1|ES196777
EST:     CTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGACGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGC
genomic: CTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGG-CGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGC
EST: gi|116457618|gb|EG500210.1|EG500210
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|86064133|gb|DR359890.1|DR359890
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAA
EST: gi|124932953|gb|EL010164.1|EL010164
EST:     CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGG                         GATGATTCCACACAAGACCAAGCGTGGTG
genomic: CCTATTCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGgttcgtattc ... tcatttacagGATGATTCCACACAAGACCAAGCGTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC
     gtttgat  putative branch site (score: 5)
                         atttgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atggtcagcttttgatctttgtgcaatgatgtctgtgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtcatttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatttga