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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC

Basic information

species Arabidopsis thaliana
transcript AT3G23390.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os07g26740.1 (Oryza sativa), 3'ss of exon 1
---gttttcaatctaaatgatgt-ttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatga--attttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
     |   | |  |||| | |  ||  |   |||  |   || |      ||| || |  | ||| |    ||  |  |||    || |||| |   ||||  |||||||| | ||||| || ||||| |||||||||||||||||||||||||  ||||| ||  | |||||||||||||| |||||||| || || || || |
taatctgatattgcaaataaggcattagaaagtgagcactatttatg----cttaatgtcatctgtattcttgtagt--attgaatatgttatcactgttttttagGTGAACGTGCCAAAAACTAAGAAGACTTACTGTAAGAACAAGGAATGCAGGAAGCACACCCTACACAAGGTTACCCAGTACAAGAAAGGAAAGGATAGCC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os07g33880.1 (Oryza sativa), 3'ss of exon 1
--gttttca-atctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
   | | || || | | |  ||||| ||        |     |     |  |   | ||   |  |  |||||| ||   |||  | ||| |   || |  |||||||| |||| ||||| ||||| || ||||| ||||||||||| ||||  ||||| ||  | |||||||| || || |||||||||||||| ||||| |
aattatgcacatttgattattgtttataggcctgcgatgtccattccacattcagtatttgttaagc-tgagtgcttttgtttcaaatttgtt--ttgtatagGTGAACGTTCCCAAGACCAAGAAGACCTACTGCAAGAACAAGGAGTGCAGGAAGCACACCCTTCACAAGGTCACTCAGTACAAGAAGGGTAAGGACAGCC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os07g33898.1 (Oryza sativa), 3'ss of exon 1
gttttcaatc-taaatgat-gtttgtatt-ttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
| ||   ||  |  |   | | |||| || || ||   |||   | ||   ||    |     || | ||    |||  |||   ||||  |   | |   |||||||| |||| ||||| ||||| || ||||| ||||||||||| ||||  ||||| ||  | |||||||| || || |||||||||||||| ||||| |
gcttctgattatgcacatttgattgtgttgtttataggcctgctatgtgctttccaataaccagtatttgttaaatttgtttcatatttcttatgtat---agGTGAACGTTCCCAAGACCAAGAAGACCTACTGCAAGAACAAGGAGTGCAGGAAGCACACCCTTCACAAGGTCACTCAGTACAAGAAGGGTAAGGACAGCC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os07g33860.1 (Oryza sativa), 3'ss of exon 1
---------------------------------------------------gttttcaatctaaatgatg----tttgtattttgatta---accttaaaagtctcttg---attttgtatgtgtgtgagtgattcatttttgattttatgaattttga--agGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
                                                      ||   |  |||| |||    || |  | ||| |||    |||   | |||  ||    |||  |||| |||     ||| |  ||||   |   ||   |||||   |||||||| |||| ||||| ||||| || ||||| ||||||||||| ||||  ||||| ||  | |||||||| || || |||||||||||||| ||||| |
gttttaaccattggtttgctgaatgtgtcttcagtgttgaaaaatttggacacatttgcttcaaattatgcacattcgactgttgtttataggcctgcgatgtccattccacattcagtatttgttaagctgactgcttttgtttcaaatttgttttgtatagGTGAACGTTCCCAAGACCAAGAAGACCTACTGCAAGAACAAGGAGTGCAGGAAGCACACCCTTCACAAGGTCACTCAGTACAAGAAGGGTAAGGACAGCC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G009412_T01 (Zea mays), 3'ss of exon 1
----gttttcaatctaaatgatgtttgtattttgatt---aaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
    |      ||  | |   || || |  |||| |    |      || |       ||||||| |     |  |  |||  |||   || ||||  |       ||||||| |||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| ||| | ||||||||||| || |||||||||||||| || || |
tacagccccatatggagaacttgcttatgctttggtcttcagttgctaaggatatgcaattttgttttaacctttgcaatttctttcacatgttatata-------gGTGAACGTTCCTAAGACCAAGAAGACCTACTGCAAGAACAAGGAGTGCAAGAAGCACACTCTCCACAAGGTTACTCAGTACAAGAAGGGTAAGGATAGCC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GRMZM2G160351_T01 (Zea mays), 3'ss of exon 1
-gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtat-gtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
 |   | ||  |   | || | | || |||  ||| | | |    ||  || ||||| ||| |  | |  |||  | | || ||  | ||   ||||   |||||||| |||| || || ||||| || ||||||||||||||||||||||  ||||| ||  |||||||||||||||| |||||||| ||||| || || |
gggactaaaatttgttcatatat-tactttatttagcatgacttttcagtttattttatattgattctttgtggatgaattatg-ctgtacacatttcctagGTGAACGTTCCGAAAACCAAGAAGACCTACTGTAAGAACAAGGAATGCAGGAAGCACACCCTGCACAAGGTTACCCAGTACAAGAAAGGTAAGGATAGCC

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G19320.2 (Glycine max), 3'ss of exon 1
---gttttcaatctaaa----tgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
   |  ||  || | ||     |   || ||  || | |     ||   |||    ||       |  |||   | || ||    |||  |||  ||   |    |||||||| |||| || |||||||| || ||||| ||||  ||||| ||||  ||||| ||  |||||||||||||||||||||||||||||||||| ||  
agtgaattagatttgaaattgcggaattggttattaggtcgtgtttggtagtacgctg----caaaaatgttaaaatgcttttccttttgtttgttg---tgaacagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGGAAGCACACCCTGCACAAGGTTACCCAATACAAGAAGGGTAAAGATAGCA

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA15G05670.1 (Glycine max), 3'ss of exon 1
gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcat--ttttgattttatgaattttga--agGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
   ||   | | | |||   |||  | ||| |||       | |  |  |    | | |  |||   | || ||  |  ||||| | || |||||  | |  |||||||| |||| || |||||||| || ||||| ||||  ||||| ||||  ||||| ||  ||||||||||||||||||||||||||||||| || ||  
--attaggtttgattgaa--ttggttattggttatttggtcatggttgctatgctggaaaatgttaaaatgcttttttcttttgttgttgtgaataataaatagGTGAACGTTCCGAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAGGAAGCACACGCTGCACAAGGTTACCCAATACAAGAAGGGTAAGGATAGCA

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G08030.1 (Glycine max), 3'ss of exon 1
gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
                 |      || ||  | |||  | |    |  ||||||    |  | | ||| |   ||| || || |||  |    |||| |||||||| |||| ||||||||||| || ||||| |||| |||||| ||||  ||||| ||  | |||||||| ||||||||||||||||| || |||||  
----------------gtaacctcatcttcttcaactctcat--ccgtttgattgcaca-atttctgatt---tcaattatggtttgtttg--tttgcagGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACGCTCCACAAGGTCACCCAATACAAGAAGGGCAAGGACAGCA

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA05G24930.1 (Glycine max), 3'ss of exon 1
gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaat-tttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
          |||       ||  || || ||   ||| ||   ||    | ||   |       |      |||| || |  |||| ||  |  ||| |||||||| |||| ||||||||||| || ||||| |||| |||||| ||||  ||||| ||  | |||||||| ||||||||||||||||| || |||||  
---------gtaagctcatcttcaatcttcatc--cctcaactctcatccgtttgattgaacaactcttgatttcaattatcgttttttgtttgcttgcagGTGAACGTTCCGAAGACAAAGAAGACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACGCTCCACAAGGTCACCCAATACAAGAAGGGCAAGGACAGCA

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv13s0064g00880.t01 (Vitis vinifera), 3'ss of exon 1
gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgt--gtgtgagtgattcatttttgattttatga-attttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
| | | ||   ||  |    || || || | ||          ||    ||  ||| | | |   | ||  |  || | | |  | | |||    | |   |||||||| |||||||||||||||| || |||||||||| |||||| || |  ||||| || ||||||||||| || |||||||||||||| || || ||  
ggtgtaaa---aagagcctgttatacttcggttttttagtcttgttatctggctttctttttcaatatgttttgttgaatatgaaatatatattgtctcacagGTGAACGTTCCAAAGACAAAGAAGACGTACTGTAAGAGCAAGGAGTGTAGGAAGCACACCTTGCACAAGGTGACACAATACAAGAAGGGCAAGGATAGCT

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g02090.t01 (Vitis vinifera), 3'ss of exon 1
-gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattt--tatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
  || | |   |||   || ||   |||     ||   ||    ||  |||  || |  |||  | |   |  |    ||||| ||   | || | | |  |||||||  |||||||||||||||| || || ||||||| |||||| ||||  ||||| || ||||||||||| || || ||||||||||||||||| ||  
atttcttacaataatacatcttcagattccatgtatatttt---gttacttctttgtcaatggttttccattttaatgttttggttaaatgtggaatatacagGTGAATGTTCCAAAGACAAAGAAGACATATTGTAAGAGCAAGGAGTGCAGGAAGCACACATTGCACAAGGTGACACAGTACAAGAAGGGTAAAGATAGCT

upper sequence: AT3G23390.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv01s0011g02080.t01 (Vitis vinifera), 3'ss of exon 2
-gttttcaatctaaatgatgtttgtatttt--gattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
   |    |  ||   ||  || | ||| |  ||||    ||   | |   ||   || |||  |   |   |     ||   | ||| | ||  ||| | |||| ||  |||||||||| ||||| |||||||| || | ||| ||||||| ||| || || ||||||||||| || || |||||||| || ||||| || |
aagtaaagaaatattagacattggcattgttagatttttttttgcaattcttt---ttcgtaattactttgtttgaatatgaatcattctctggctttggcagGTAAATGTTCCAAAGACCAAGAAGACTTACTGCAAAAGCAAAGAATGCAGAAAACACACCTTGCACAAGGTGACACAGTACAAGAAAGGAAAAGATAGCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501066|gb|HO206606.1|HO206606
EST:     TTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
genomic: TTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|125002732|gb|EL075001.1|EL075001
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGAACAAAGAACACTTA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGA-CAAAGAACACTTA
EST: gi|124993788|gb|EL066057.1|EL066057
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATTAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTA
EST: gi|125092320|gb|EL150143.1|EL150143
EST:     GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTA
genomic: GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTA
EST: gi|47828759|gb|CK118443.1|CK118443
EST:     GAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
genomic: GAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|152035372|gb|BP851782.2|BP851782
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTATTGTAAGAACAAGGAATGCAAA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|164158053|gb|ES101154.1|ES101154
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACAC
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACAC
EST: gi|125232159|gb|EL246244.1|EL246244
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAA
EST: gi|125233403|gb|EL247488.1|EL247488
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTA
EST: gi|125013418|gb|EL085687.1|EL085687
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACA
EST: gi|125229994|gb|EL244079.1|EL244079
EST:     GAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATAG                         GTGAACATTCCAAAGACAAAGAACACTTA
genomic: GAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAAT-Ggtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTA
EST: gi|164094899|gb|ES054416.1|ES054416
EST:     GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACA
genomic: GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACA
EST: gi|125171282|gb|EL194249.1|EL194249
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAG
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAG
EST: gi|163974784|gb|ES086276.1|ES086276
EST:     GACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
genomic: GACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|163987449|gb|ES060785.1|ES060785
EST:     GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTAC
genomic: GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|124924782|gb|EL002845.1|EL002845
EST:     GACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTA
genomic: GACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTA
EST: gi|125220268|gb|EL234353.1|EL234353
EST:     CGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
genomic: CGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|125060839|gb|EL129516.1|EL129516
EST:     CGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
genomic: CGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|125290835|gb|EL304920.1|EL304920
EST:     GAACGGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTA
genomic: GAAC-GACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTA
EST: gi|163967945|gb|ES158128.1|ES158128
EST:     AACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGA-CACTTAC
genomic: AACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|164047225|gb|ES144640.1|ES144640
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAG
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAG
EST: gi|164056431|gb|EL974429.1|EL974429
EST:     GACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTAC
genomic: GACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|86086549|gb|DR382308.1|DR382308
EST:     CCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACCCTTACTGTAAGAACAAGGAATGCAAA
genomic: CCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAA
EST: gi|164102301|gb|ES200782.1|ES200782
EST:     ACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTACTGTAAG
genomic: ACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAG
EST: gi|164112343|gb|ES039265.1|ES039265
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTAC
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|164202035|gb|ES201479.1|ES201479
EST:     GAACGTACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTAC
genomic: GAACG-ACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|164107852|gb|ES204342.1|ES204342
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAATACAAAGAACACTTAC
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|124844233|gb|EH928670.1|EH928670
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAA
EST: gi|124851536|gb|EH935973.1|EH935973
EST:     GGAACGACGACGGCACAAAAGCTTCACCGGNGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACA
genomic: GGAACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACA
EST: gi|164140460|gb|EL990439.1|EL990439
EST:     GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACAATTAC
genomic: GACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC
EST: gi|164099366|gb|ES202415.1|ES202415
EST:     AACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATG                         GTGAACATTCCAAAGACAAAGAACACTTAC
genomic: AACGACGACGGCACAAAAGCTTCACCGGAGATCAGAGACGCGAAAATGgtaaattgtt ... aattttgaagGTGAACATTCCAAAGACAAAGAACACTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC
                                ttttgat  putative branch site (score: 4)
                          attcatttttgatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttttcaatctaaatgatgtttgtattttgattaaccttaaaagtctcttgattttgtatgtgtgtgagtgattcatttttgattttatgaattttgaagGTGAACATTCCAAAGACAAAGAACACTTACTGTAAGAACAAGGAATGCAAAAAGCATACTTTGCACAAGGTTACCCAATACAAGAAGGGTAAAGACAGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - -atctaaa
- - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - -ccttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - gattttg