1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttattttgtttcgaaaaatcaatgattttgtctttttggtaaaaacatttttagctgtggatttgccttgagtctaattgtaattggtctacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTTAGTTTCACATCTC
species | Arabidopsis thaliana |
transcript | AT3G22780.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATCGGAACTTCAACTCCCAAATCCAAATTCGAG GATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTCEST: gi|86060675|gb|DR356432.1|DR356432
genomic: AGATCGGAACTTCAACTCCCAAATCCAAATTCGAGgtttttttcc ... tacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTC
EST: AGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAG GATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTC
genomic: AGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAGgtttttttcc ... tacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTC
acatttttagctgtggatttgccttgagtctaattgtaattggtctacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTTAGTTTCACATCTC
gtctaat putative branch site (score: 3)
taattgtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttattttgtttcgaaaaatcaatgattttgtctttttggtaaaaacatttttagctgtggatttgccttgagtctaattgtaattggtctacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTTAGTTTCACATCTC
- - - - - - - - aaatcaa
- - - - - - - - - - - - gattttg
- - - - - - - - - - - - - - - - -tttttgg
- - - - - - - - - - - - - - - - - - - - taaaaac