Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatgttgtgagatcaaaattttaaattgttcagcttttcgtgttcccatgtttttggaagaagggtaagtgggttttaagttttgtggttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA

Basic information

species Arabidopsis thaliana
transcript AT3G22330.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 1
---------------------------------gtatgtaatgttgtgagatcaa-----aattttaaattgttcagcttttcgtgttcccatgtttttggaagaagggtaagtgggttttaagtt--ttgtggttttga---gtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA
                                 | ||   ||| |    | |  |     || | |   | ||| ||  ||| |   |    |   ||||       | ||| |   |  | | ||  || |  | || |   |||||  |||||| |||| || || ||| | ||||| |||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| || |
gtccgctttgcttcctagagttttctcgtcggtgcataatatgatccatggttgataattaactctgtgtagtttagactttagacgtttagtaactttgagcttctgttaattttttaattaattaattattttgttaaattgtagAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATA

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA02G45030.1 (Glycine max), 3'ss of exon 1
------------------------gtatgtaatgtt--gtgagatcaaaattttaaattgttcagcttttcgtgttcccatgtttttggaagaagggtaagtgggttttaagttttgtggttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA
                         | | | |||     |  ||||     || | | |  ||    | | |||||   |||||  |        | |   |   |||||| |  |    |  |   ||||  |||||| |||| || || ||| | ||||| |||||||||||||| ||||| |||||||| || ||||| |||||||||||||| || ||||| || |
gtttgctttgcttcctctggtttattctttgatgcaaaatatgatccgtggttgataattatcgatgtgtagtgttg--atgttgataacttcgagattgttattttttaattaattaattaatttttagAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATA

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA08G41510.1 (Glycine max), 3'ss of exon 2
---gtatgtaatgttgtgagat-caaaattttaaattgttcagcttttcgtgttcccatgtttttggaagaagggtaagtgggttttaagttttgtggttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA
   | |    |  || ||  ||  |||| |     ||   ||  || |  | |||    | |  ||      | |  |     || |   | |||| |||    ||||| |||||||||||| || || ||| | || || |||||||||||||| ||||| || ||||| || || || |||||||||||||| || ||| | ||||
caggaaaactaatttatgccatataaaactggtgtttagacaatttattatcttc----gatcatgagtcttgagatacacaattattgttgttgttgtt----gtagAGAGCTGTGCTGGAACCTGCAATGCAAGGACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACA

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA18G14670.1 (Glycine max), 3'ss of exon 1
gtatgtaatgttgtgagatcaaaattttaaattgttcagct----tttcgtgttcccat-gtttttggaagaagggtaagtgggttttaagttttgtggttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA
        | |   || | | || || |    | |  | ||    ||| |       ||  | |||||      |    | |   || || | |||| ||| |  ||||| ||||||||| || || |||||| | || || |||||||| ||||| ||||| || ||||| || || || |||||||||||||| || ||| | ||||
--------tttcaggaaaactaatttatgccatataaaactgctgtttagaaaaattattatctttggtcatgagtcttgagatattcaattattgttgttgtt-gtagAGAGCTGTGCTAGAACCTGCGATGCAAGGACGTGATATGATAGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACA

upper sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 1
gtatgtaatgttgtgagatcaaaattttaaattgttcagcttttcgtgttcccatgtttttggaagaagggtaagtgggttttaagttttgtggttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA
  |||| |  |  | | ||  |  | || |  |||       |   | |||    ||||| |  |      |    |      ||  |||||    |||   ||| |||||||||||| || || ||| | || || || ||||| ||||||||||| || || || || || || ||||||||||||||||| ||||| || |
tcatgttaattgttcacatttatttcttgatatgtcagtaactcaatattc---ggttttggagattccatttttcgtaaaaaaaaatttgta-cattgtacagAGAGCTGTGCTGGAACCTGCAATGCAAGGGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116406394|gb|EG448986.1|EG448986
EST:     TTGTTAAAGCTTTGAGTAGTAAGGGTATTGAGAAACTCTTTCCTATTCAG                         AAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCT
genomic: TTGTTAAAGCTTTGAGTAGTAAGGGTATTGAGAAACTCTTTCCTATTCAGgtatgtaatg ... ttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccatgtttttggaagaagggtaagtgggttttaagttttgtggttttgagtagAAAGCTGTGCTGGAGCCAGCGATGGAGGGTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACA
                              ttttaagtttt  TA-rich tract