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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatgatcttcttctctgttccatttggttatagagatcaattaaaagtttagatttttttaactgagtttttgatgtttgtgtttggttgaatagAAAGCTGTGTTGGAGCCAGCGATGGAGGGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACA

Basic information

species Arabidopsis thaliana
transcript AT3G22310.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22310.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 1
---------------------------------------------gtatatatgatcttcttctctgttccattt-ggttatagagatcaattaaaagtttagatttttttaactgagtttttgatgtttgtgtttggttgaat---agAAAGCTGTGTTGGAGCCAGCGATGGAGGGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACA
                                               ||   ||||  |   ||||||    ||| |  | ||||  |  | |||   || || || | |||| |   |  || ||   | | ||| ||| |||   |||  ||||||||||| || || ||| | ||||||||||||||||| || || || |||||||| || ||||| |||||||||||||| || || || || |
gtccgctttgcttcctagagttttctcgtcggtgcataatatgatccatggttgataattaactctgtgtagtttagactttagacgtttagtaact-ttgagcttctgttaattttttaattaattaat-tattttgttaaattgtagAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATA

upper sequence: AT3G22310.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: GLYMA02G45030.1 (Glycine max), 3'ss of exon 1
-------------------gtatatatgatcttcttctctgttccatttggtt-atagagatcaattaaaagtttagatttttttaact--gagtttttgatgtttgtgtt---tggttga---atagAAAGCTGTGTTGGAGCCAGCGATGGAGGGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACA
                   || |||    |  |      | |      ||||| |||   ||| ||    ||| | ||| ||  |||||  ||| || | || |||   ||   |  || |    ||||  ||||||||||| || || ||| | ||||||||||||||||| || || || |||||||| || ||||| |||||||||||||| || || || || |
gtttgctttgcttcctctggtttattctttgatgcaaaatatgatccgtggttgataattatcgatgtgtagtgttgatgttgataacttcgagattgttattttttaattaattaattaatttttagAGGGCTGTGTTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaaagtttagatttttttaactgagtttttgatgtttgtgtttggttgaatagAAAGCTGTGTTGGAGCCAGCGATGGAGGGTCGTGATATGATTGGCCGTGCAAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATTATTGACA
     agtttagattttttta  TA-rich tract