1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtctcgtttcatgttcattttgttgtcttgtgttcttcagtcttcgattctcgtcttcactatatgcgctaaaagcttattctctgtttggtgtaaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTATGTCGAATTTGCCTCGTCCGGAATTGAAGCAG
species | Arabidopsis thaliana |
transcript | AT3G20290.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAG ACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTATGTEST: gi|164223093|gb|ES160636.1|ES160636
genomic: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAGgtctcgtttc ... aaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTATGT
EST: CAGGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAG ACGGCGATGGCCGTATTACTGGTAACGAEST: gi|164051018|gb|ES041259.1|ES041259
genomic: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAGgtctcgtttc ... aaatgagcagACGGCGATGGCCGTATTACTGGTAACGA
EST: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAG ACGGCGATGGCCGTATTACTGGTAACGATGCGATCEST: gi|124872878|gb|EH954523.1|EH954523
genomic: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAGgtctcgtttc ... aaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATC
EST: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAG ACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTAEST: gi|164033541|gb|ES131209.1|ES131209
genomic: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAGgtctcgtttc ... aaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTA
EST: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAG ACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGEST: gi|163985113|gb|ES019224.1|ES019224
genomic: CAAGGAGAATCAAATGATCTACAAGGAATGGTTCGAATTCTCCGATTCAGgtctcgtttc ... aaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAG
EST: AGGAGAATCAAATGATACTAACAAGGAATGGTTCGAATTCTCCGATTCAG ACGGCGATGGCCGTATTACTGGTAACGATGCGATC
genomic: AGGAGAATCAAATGAT-CT-ACAAGGAATGGTTCGAATTCTCCGATTCAGgtctcgtttc ... aaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATC
ctcgtcttcactatatgcgctaaaagcttattctctgtttggtgtaaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTATGTCGAATTTGCCTCGTCCGGAATTGAAGCAG
cgctaaa putative branch site (score: 3)
actatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctcgtttcatgttcattttgttgtcttgtgttcttcagtcttcgattctcgtcttcactatatgcgctaaaagcttattctctgtttggtgtaaatgagcagACGGCGATGGCCGTATTACTGGTAACGATGCGATCAAGTTCTTCACTATGTCGAATTTGCCTCGTCCGGAATTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC