1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acacatagttcactcctttttattttcctcggaagttctctttttcatggattcttagcattatgtaatatacactctaactgctttactttgattttagAACAAGGGTTTTAGGGCTTGGATGCTTTGTTTTCATTGAAAAAGAAGTAGAAGGAGTGTATACAAGGATTATGGGAACTCACATCAATTTCAACAACTTA
species | Arabidopsis thaliana |
transcript | AT3G19290.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAATTAATTTG AACAAGGGTTTTAGGGCTTGGATGCTTTGTTTTCATTG-AAAAGAAGTAGA
genomic: GAAATTAATTTGgtaaaacata ... ttgattttagAACAAGGGTTTTAGGGCTTGGATGCTTTGTTTTCATTGAAAAAGAAGTAGA
catggattcttagcattatgtaatatacactctaactgctttactttgattttagAACAAGGGTTTTAGGGCTTGGATGCTTTGTTTTCATTGAAAAAGAAGTAGAAGGAGTGTATACAAGGATTATGGGAACTCACATCAATTTCAACAACTTA
ctttacttt CT-rich tract
attatgtaatataca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacatagttcactcctttttattttcctcggaagttctctttttcatggattcttagcattatgtaatatacactctaactgctttactttgattttagAACAAGGGTTTTAGGGCTTGGATGCTTTGTTTTCATTGAAAAAGAAGTAGAAGGAGTGTATACAAGGATTATGGGAACTCACATCAATTTCAACAACTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
acacata
- - - - - cactcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctaac