1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttattgttttggttgaagtaaaacttaacccatttataatgtttggaactttggctgattttgttaatactctgttgcgatcatctgtaattttcagTAGCTTAAACGGGCAATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCACCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGA
species | Arabidopsis thaliana |
transcript | AT3G18680.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAG TAGCTTAAACGGGCAATCATCTTTCCCACGACTGACCTTCCTTTGATGGAAEST: gi|125175197|gb|EL195409.1|EL195409
genomic: AATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGgtattattaa ... taattttcagTAGCTTAAACGGGCAATCATCTTTCCCACGACTG-CCTTCCTTTGATGGAA
EST: AATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAG TAGCTTAAACGGG
genomic: AATGGTTCATCTCCAGACTCCATGAACGGAAACGGGAACGGGAACGGGAGgtattattaa ... taattttcagTAGCTTAAACGGG
ttggaactttggctgattttgttaatactctgttgcgatcatctgtaattttcagTAGCTTAAACGGGCAATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCACCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGA
tgttaat putative branch site (score: 3)
ttttc putative PPT
tgattttgttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttattgttttggttgaagtaaaacttaacccatttataatgtttggaactttggctgattttgttaatactctgttgcgatcatctgtaattttcagTAGCTTAAACGGGCAATCATCTTTCCCACGACTGCCTTCCTTTGATGGAACATCCAAACCACCGCTTAAATGGAGAAGGGTTTTACTCAAAGTCAGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - gttttgg
- - - - - - - - - - gtaaaac
- - - - - - - - - - - - - - -aacccat
- - - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc