1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agaattgactatagcattcaccattagcttctgtttcttcctctttccactgatcttttaggttcttgataacattgataatccatttcaaattctgcagGTACATATATACACATACAAGTCTCTGTGAAATATGACATCTCAGCTAAAACGAACTTTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAG
species | Arabidopsis thaliana |
transcript | AT3G17420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAGCCGGATATAGAAAGAAGAAACAGAGGAAATTTGTTCATAAAGGAG GTACATATATACACATACAAGTCTCTGTGAAATATGACATCTCAGCTAAAA
genomic: CCCAGCCGGATATAGAAAGAAGAAACAGAGGAAATTTGTTCATAAAGGAGgtattgtgtt ... aattctgcagGTACATATATACACATACAAGTCTCTGTGAAATATGACATCTCAGCTAAAA
tccactgatcttttaggttcttgataacattgataatccatttcaaattctgcagGTACATATATACACATACAAGTCTCTGTGAAATATGACATCTCAGCTAAAACGAACTTTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAG
ataacattgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaattgactatagcattcaccattagcttctgtttcttcctctttccactgatcttttaggttcttgataacattgataatccatttcaaattctgcagGTACATATATACACATACAAGTCTCTGTGAAATATGACATCTCAGCTAAAACGAACTTTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - ttcacca
- - - - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaca