Sequence
atgc intronic sequence ATGC exonic sequence...atgtttaagcaaattttgtcattgtctactattccctcataataaaacttacgtcaaaatactaaaatgtatatttgtttatttttttctttcatgatagAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGTTAAACTATCTCATCTCCGTCTCTAAGAACATCAAAGACCGTGAAGACTT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G17150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164017471|gb|ES075179.1|ES075179EST: GAACTCAAATTTACGAG AGCTTGCGTCGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGT
genomic: GAACTCAAATTTACGAGgtgagatcaa ... ttcatgatagAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGT
EST:
gi|19875607|gb|AU236438.1|AU236438EST: CGTCTCTACTCTCAATCTTGATCCTAGAAGCAAGAACTCAAATTTACGAG AGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGT
genomic: CGTCTCTACTCTCAATCTTGATCCTAGAAGCAAGAACTCAAATTTACGAGgtgagatcaa ... ttcatgatagAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGT
EST:
gi|19742001|gb|AU227354.1|AU227354EST: CCTAGAAGCCAGAACTCACATTTACGAG AGCTTGCGT-GATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGT
genomic: CCTAGAAGCAAGAACTCAAATTTACGAGgtgagatcaa ... ttcatgatagAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacttacgtcaaaatactaaaatgtatatttgtttatttttttctttcatgatagAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGTTAAACTATCTCATCTCCGTCTCTAAGAACATCAAAGACCGTGAAGACTT
tactaaa putative branch site (score: 1)
tatttgtttatttttt putative PPT
tcaaaatactaaaatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtttaagcaaattttgtcattgtctactattccctcataataaaacttacgtcaaaatactaaaatgtatatttgtttatttttttctttcatgatagAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGTTAAACTATCTCATCTCCGTCTCTAAGAACATCAAAGACCGTGAAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - aagcaaa
- - - - - - - - - - - - - - - - -ccctcat
- - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaata