Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctgggggttttaaagctctctatgagcaacatttgtttgcgttctgatatgtttaagtctggaactaactattgttcttcttctttatgttgcaacagCCTCTCAGACTAGATATCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G15980.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116382436|gb|EG425028.1|EG425028
EST:     GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATG                         CCTCTCAGACTAGATATCAAG
genomic: GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATGgtaagtagtc ... gttgcaacagCCTCTCAGACTAGATATCAAG
EST: gi|116458895|gb|EG501487.1|EG501487
EST:     GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATG                         CCTCTCAGACTAGATATCAAG
genomic: GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATGgtaagtagtc ... gttgcaacagCCTCTCAGACTAGATATCAAG
EST: gi|116382435|gb|EG425027.1|EG425027
EST:     GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATG                         CCTCTCAGACTAGATATCAAG
genomic: GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATGgtaagtagtc ... gttgcaacagCCTCTCAGACTAGATATCAAG
EST: gi|116382437|gb|EG425029.1|EG425029
EST:     GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATG                         CCTCTCAGACTAGATATCAAG
genomic: GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATGgtaagtagtc ... gttgcaacagCCTCTCAGACTAGATATCAAG
EST: gi|116409997|gb|EG452589.1|EG452589
EST:     GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATG                         CCTCTCAAACTAAATATCAAG
genomic: GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATGgtaagtagtc ... gttgcaacagCCTCTCAGACTAGATATCAAG
EST: gi|116382434|gb|EG425026.1|EG425026
EST:     GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATG                         CCTCTCAGACTAGATATCAAG
genomic: GCGAGATACGAGATCCGACGAGCAGATCTTCTGCTTAATCTGTAAACATGgtaagtagtc ... gttgcaacagCCTCTCAGACTAGATATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatatgtttaagtctggaactaactattgttcttcttctttatgttgcaacagCCTCTCAGACTAGATATCAAG
                   aactaac  putative branch site (score: 1)
                               ttcttcttctttatgt  putative PPT
     atgtttaa  TA-rich tract