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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatgtgaaaatgaatttgtttccaatagaagatggtattgatgatcatttgatagttgaatttaacatggagaagaatgatgtggtttttgtttgcagACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTGCCAAGTGATTCAGATACACATGATGATTTCAAGCCTACACAAAAAGTCC

Basic information

species Arabidopsis thaliana
transcript AT3G15660.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075951|gb|DR371708.1|DR371708
EST:     CGTTCTAGCAGATTG                         ACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG
genomic: CGTTCTAGCAGATTGgttagattct ... ttgtttgcagACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG
EST: gi|19874734|gb|AU235565.1|AU235565
EST:     GACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTG                         ACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG
genomic: GACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGgttagattct ... ttgtttgcagACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatttgatagttgaatttaacatggagaagaatgatgtggtttttgtttgcagACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTGCCAAGTGATTCAGATACACATGATGATTTCAAGCCTACACAAAAAGTCC
                atttaac  putative branch site (score: 3)
                                          tttttgttt  putative PPT
        atagttgaatttaa  TA-rich tract