Sequence
atgc intronic sequence ATGC exonic sequence...tctaatggaattttggtacactcagaataagtagagaaattgtttggtattagaataaactaaaagacacttatatgatgatataattgtgtatatgaagGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTTCTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGAC
Basic information
species | Arabidopsis thaliana |
transcript | AT3G13950.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|301501435|gb|HO206975.1|HO206975EST: TCTACCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGTATACGACTAAG GAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTTCT
genomic: TCTACCTCAATGAGTCTCATTCTCCTTGTCATCAGCGGTATACGACTAAGgtaccaataa ... gtatatgaagGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggtattagaataaactaaaagacacttatatgatgatataattgtgtatatgaagGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTTCTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGAC
aactaaa putative branch site (score: 2)
ttatatgatgatataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctaatggaattttggtacactcagaataagtagagaaattgtttggtattagaataaactaaaagacacttatatgatgatataattgtgtatatgaagGAACCGGATGATAATGGCTATCCTCGGAACATTTATGGTGGTGGCGGTTCTTTGTATATCAGCGGCGTTCTTCTTCGCCATCGTGCTGGTTCAATCCGAC
- - - - -attttgg
- - - - - - - - -acactca
- - - - - - - - - - - - gaataag
- - - - - - - - - - - - - - - - agagaaa
- - - - - - - - - - - - - - - - - - - - tgtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa