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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcctcctttgcaatcatattattaacgatatcaaaataggtgttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT

Basic information

species Arabidopsis thaliana
transcript AT3G13920.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436248|gb|EG478840.1|EG478840
EST:     GCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: GCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|164139262|gb|EL970023.1|EL970023
EST:     CCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGGTTTGATGCACGTCAGTTTG
genomic: CCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAG-TTTGATGCACGTCAGTTTG
EST: gi|86035044|gb|DR330797.1|DR330797
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         SATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATG
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATG
EST: gi|86035160|gb|DR330913.1|DR330913
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT
                          atctgat  putative branch site (score: 4)
                                ttgtttttgttctttt  CT-rich tract
                                   tttttgttctttttat  TA-rich tract