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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcctcctttgcaatcatattattaacgatatcaaaataggtgttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGA

Basic information

species Arabidopsis thaliana
transcript AT3G13920.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86034984|gb|DR330737.1|DR330737
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034973|gb|DR330726.1|DR330726
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|116436248|gb|EG478840.1|EG478840
EST:     GCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: GCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035139|gb|DR330892.1|DR330892
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034992|gb|DR330745.1|DR330745
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034913|gb|DR330666.1|DR330666
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035064|gb|DR330817.1|DR330817
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034985|gb|DR330738.1|DR330738
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|164139262|gb|EL970023.1|EL970023
EST:     CCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGGTTTGATGCACGTCAGTTTG
genomic: CCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAG-TTTGATGCACGTCAGTTTG
EST: gi|86035170|gb|DR330923.1|DR330923
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034997|gb|DR330750.1|DR330750
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035066|gb|DR330819.1|DR330819
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034888|gb|DR330641.1|DR330641
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034967|gb|DR330720.1|DR330720
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTAA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|47829698|gb|CK119382.1|CK119382
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035051|gb|DR330804.1|DR330804
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035044|gb|DR330797.1|DR330797
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         SATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATG
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATG
EST: gi|86035092|gb|DR330845.1|DR330845
EST:     AACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: AACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034884|gb|DR330637.1|DR330637
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034857|gb|DR330610.1|DR330610
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|116420410|gb|EG463002.1|EG463002
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035131|gb|DR330884.1|DR330884
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86035037|gb|DR330790.1|DR330790
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|116403403|gb|EG445995.1|EG445995
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: gi|86034886|gb|DR330639.1|DR330639
EST:     CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG                         CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGTGTGA
                          atctgat  putative branch site (score: 4)
                                ttgtttttgttctttt  CT-rich tract
                                   tttttgttctttttat  TA-rich tract