1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catttcctcctttgcaatcatattattaacgatatcaaaataggtgttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT
species | Arabidopsis thaliana |
transcript | AT3G13920.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034937|gb|DR330690.1|DR330690
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCSAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86035064|gb|DR330817.1|DR330817
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86035170|gb|DR330923.1|DR330923
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86035160|gb|DR330913.1|DR330913
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86035037|gb|DR330790.1|DR330790
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|164139262|gb|EL970023.1|EL970023
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGGTTTGATGCACGTCAGTTTGEST: gi|47829698|gb|CK119382.1|CK119382
genomic: CCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAG-TTTGATGCACGTCAGTTTG
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034857|gb|DR330610.1|DR330610
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|116403403|gb|EG445995.1|EG445995
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034967|gb|DR330720.1|DR330720
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTAAEST: gi|86035092|gb|DR330845.1|DR330845
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: AACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034880|gb|DR330633.1|DR330633
genomic: AACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGNATGCACGTCAGTTTGEST: gi|86035044|gb|DR330797.1|DR330797
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTG-ATGCACGTCAGTTTG
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG SATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGEST: gi|86035139|gb|DR330892.1|DR330892
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATG
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|116436248|gb|EG478840.1|EG478840
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: GCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034992|gb|DR330745.1|DR330745
genomic: GCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86035125|gb|DR330878.1|DR330878
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: AAGCATCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTATGAEST: gi|86035051|gb|DR330804.1|DR330804
genomic: AAGC-TCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034997|gb|DR330750.1|DR330750
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|116420410|gb|EG463002.1|EG463002
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034913|gb|DR330666.1|DR330666
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034888|gb|DR330641.1|DR330641
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034886|gb|DR330639.1|DR330639
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGAEST: gi|86034984|gb|DR330737.1|DR330737
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
EST: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAG CATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
genomic: CAAGCTCCCTGAAAAAAGCCCTTTACTCTCGCTTACCAACTTTGCTCCAGgttcgcatcc ... ttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGA
gttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT
atctgat putative branch site (score: 4)
ttgtttttgttctttt CT-rich tract
tttttgttctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttcctcctttgcaatcatattattaacgatatcaaaataggtgttgtctctcttccttttgatatgaaatctgattgtttttgttctttttatgtagCATGGCAGGATCTGCACCAGAAGGCACACAGTTTGATGCACGTCAGTTTGACCAGAAACTCAATGAAGT
catttcc
- - - - - - - -aatcata
- - - - - - - - - - - - - - - - -atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttttg