1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gacttttaagcatattgtcttggatcgtgtctagtgtctattatattttctggctattgcttattttgattgtgttgattttggttttgtgtaactatagAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCA
species | Arabidopsis thaliana |
transcript | AT3G13445.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTAGATTTCGGATTTCTTCGCTATCCAAAG AAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAEST: gi|164117637|gb|ES001032.1|ES001032
genomic: CCCTAGATTTCGGATTTCTTCGCTATCCAAAGgtctgacctt ... gtaactatagAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAA
EST: GTCTTAAAGCTACGTAAACCCTAGACTTCGGATTTCTTCGCTATCCAAAG AAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAEST: gi|164058140|gb|ES004265.1|ES004265
genomic: GTCTTAAAGCTACG-AAACCCTAGATTTCGGATTTCTTCGCTATCCAAAGgtctgacctt ... gtaactatagAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCA
EST: CGTCTTAAAGCTACGAAACCCTAGA-CTCGGATTTCTTCGCTATCCAAAG AAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCA
genomic: CGTCTTAAAGCTACGAAACCCTAGATTTCGGATTTCTTCGCTATCCAAAGgtctgacctt ... gtaactatagAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCA
ttttctggctattgcttattttgattgtgttgattttggttttgtgtaactatagAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCA
gtgtaac putative branch site (score: 3)
ttattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacttttaagcatattgtcttggatcgtgtctagtgtctattatattttctggctattgcttattttgattgtgttgattttggttttgtgtaactatagAAGAATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - -aagcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg