Sequence
atgc intronic sequence ATGC exonic sequence...gtatgttagtatgtactatgtaatatacaaagaaaaacattcaacgcccaacttcttatcaatagttaagtttgatagtatataaaaaggtcattttcagAAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACCGTAAATACGCAACAGGCTACAGAACAAACCGGGCTACGGCCACCGGTTA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G12977.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116471937|gb|EG514529.1|EG514529EST: TGTCTTGATCGACGTCGATCTTAACAAATGCGAGCCTTGGGACATTCCTC AAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACC
genomic: TGTCTTGATCGACGTCGATCTTAACAAATGCGAGCCTTGGGACATTCCTCgtaagtaatt ... tcattttcagAAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACC
EST:
gi|116474205|gb|EG516797.1|EG516797EST: TGTCTTGATCGACGTCGATCTTAACAAATGCGAGCCTTGGGACATTCCTC AAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACC
genomic: TGTCTTGATCGACGTCGATCTTAACAAATGCGAGCCTTGGGACATTCCTCgtaagtaatt ... tcattttcagAAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcccaacttcttatcaatagttaagtttgatagtatataaaaaggtcattttcagAAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACCGTAAATACGCAACAGGCTACAGAACAAACCGGGCTACGGCCACCGGTTA
gtttgat putative branch site (score: 5)
tcattttc putative PPT
aatagttaagtttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttagtatgtactatgtaatatacaaagaaaaacattcaacgcccaacttcttatcaatagttaagtttgatagtatataaaaaggtcattttcagAAACGGCGAGAGTGGGAGGGAAAGAATGGTACTTTTACAGCCAAAAAGACCGTAAATACGCAACAGGCTACAGAACAAACCGGGCTACGGCCACCGGTTA
- - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - -gaaaaac
- - - - - - - - - - - - - - - - - - - attcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa