1 5' 3' |
...aactgattagatacaataaggcaacactgattccattactgttagtctgttactacaaaaagaattgttgctcaagtattgtttgtgttggttggtgcagATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTCTTGGCATCTTCATCTTCGCATTGGTAATTGCTTATCACTACGTAACTGCTGATCCCAAAT
species | Arabidopsis thaliana |
transcript | AT3G12587.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTCTGGAGATCTCATCCTTTCCCACCGATTCCGTCCCGATAAAACG ATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTCTTGGCATCTTCEST: gi|164147064|gb|ES120412.1|ES120412
genomic: TGGAGTCTGGAGATCTCATCCTTTCCCACCGATTCCGTCCCGATAAAACGgtaaatctcg ... gttggtgcagATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTCTTGGCATCTTC
EST: ATCTCATCCTTTCCCACCGATTCCGTCCCGATAAAACG ATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTCEST: gi|124807909|gb|EH894313.1|EH894313
genomic: ATCTCATCCTTTCCCACCGATTCCGTCCCGATAAAACGgtaaatctcg ... gttggtgcagATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTC
EST: GGAGTCTGGAGATCTCATCCTTTCCCACCGATTCCGTCCCGATAAAACG ATGATCGATGATCAGGACTTGGGGTTTA
genomic: GGAGTCTGGAGATCTCATCCTTTCCCACCGATTCCGTCCCGATAAAACGgtaaatctcg ... gttggtgcagATGATCGATGATCAGGACTTGGGGTTTA
tctgttactacaaaaagaattgttgctcaagtattgtttgtgttggttggtgcagATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTCTTGGCATCTTCATCTTCGCATTGGTAATTGCTTATCACTACGTAACTGCTGATCCCAAAT
aaaaagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgattagatacaataaggcaacactgattccattactgttagtctgttactacaaaaagaattgttgctcaagtattgtttgtgttggttggtgcagATGATCGATGATCAGGACTTGGGGTTTATTGCCAACTTTCTTGGCATCTTCATCTTCGCATTGGTAATTGCTTATCACTACGTAACTGCTGATCCCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - -gatacaa
- - - - - - - - - - gcaacac
- - - - - - - - - - - - - - - - - - - - - - - ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt