Sequence
atgc intronic sequence ATGC exonic sequencegtcattttctgtttcttcatttccgattgattgttgattctatcttccctgaatttataccatctagagataagcttaagtgaatcacaggaactctaatgagtatgtttgttcttcttgtttaagtgagtttagtttctaaaaacttctgttttgatggatttgagcagGCAATGTCGTATGCAAGGTTAGCTGGGCTTCAACCAATATACGGTCTAT
Basic information
species | Arabidopsis thaliana |
transcript | AT3G12520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G12520.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: LOC_Os09g06499.2 (Oryza sativa), 3'ss of exon 2
gtcattttctgtttcttcatttccgattgattgttgattctatcttccctgaatttataccatctagagataagcttaagtgaatcacaggaactctaatgagtatgtttgttcttcttgtttaagtgagtttagtttctaaaaacttctgttttgatggatttgagcagGCAATGTCGTATGCAAGGTTAGCTGGGCTTCAACCAATATACGGTCTAT
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------------------------------------------------------taaaagtcttccgatacaaatatgcaatggtca-aagtcctgaaaataataaccaaaaaatgccag---aaatgaaaata----ttaataattagcattgtattg--------tagGCAATGTCATATGCAAAGTTGGCTGGGCTTCACCCAATATATGGGTTAT
upper sequence: AT3G12520.1 (Arabidopsis thaliana), 3'ss of exon 1
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtcattttctgtttcttcatttccgattgattgttgattctatcttccctgaatttataccatctagagataagcttaagtgaatcacaggaactctaatgagtatgtttgttcttcttgtttaagtgagtttagtttctaaaaacttctgttttgatggatttgagcagGCAATGTCGTATGCAAGGTTAGCTGGGCTTCAACCAATATACGGTCTAT
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-----------------------------------------------------------------tcaaataggattgggt-atctaaggttaatttacatagcgtgattgtttacattgttgaa-taaatatgttctgc---agctgattgtttgttgtgcatgtccagGCAATGTCTTATGCAAGGTTAGCTGGGCTTGAACCAATATATGGACTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19877624|gb|AU238455.1|AU238455EST: AGCTCGATCTTATGGCTGGTATCACCGTCGGTATCATGCTTGTTCCCCAG GCAATGTCGTATGCAAGGTTAGCTGGGCTTCAACCAATATACGGTCTAT
genomic: AGCTCGATCTTATGGCTGGTATCACCGTCGGTATCATGCTTGTTCCCCAGgtcattttct ... atttgagcagGCAATGTCGTATGCAAGGTTAGCTGGGCTTCAACCAATATACGGTCTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttgtttaagtgagtttagtttctaaaaacttctgttttgatggatttgagcagGCAATGTCGTATGCAAGGTTAGCTGGGCTTCAACCAATATACGGTCTAT
tttagtttctaaaaa TA-rich tract