1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tctctaagatttgctcagttctcatgtaattctattattcagttttatttagagtgtttgtgcgttttgtaatggcactcacaaaagtagatactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATGCTTGCTGGAGATTTCTTAGACCCCATACAA
species | Arabidopsis thaliana |
transcript | AT3G11945.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTCCAAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGG GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAEST: gi|125022426|gb|EL094695.1|EL094695
genomic: CGGTCC-AAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
EST: TTCAACCAATTATAGAAAAATCTCAATCCGG GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAEST: gi|86085149|gb|DR380908.1|DR380908
genomic: TTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
EST: GAATGCGGTCCAAATTTGTTTCAMCCAATTATAGAAAAATCTCAATCCGG GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAEST: gi|124744157|gb|EH835319.1|EH835319
genomic: GAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
EST: GAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGG GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGAT
genomic: GAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGAT
tatttagagtgtttgtgcgttttgtaatggcactcacaaaagtagatactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATGCTTGCTGGAGATTTCTTAGACCCCATACAA
cactcac putative branch site (score: 2)
ttttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctaagatttgctcagttctcatgtaattctattattcagttttatttagagtgtttgtgcgttttgtaatggcactcacaaaagtagatactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGAATTGCCCGGTTCCAAAATGCTTGCTGGAGATTTCTTAGACCCCATACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacaaa